Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   PCP46_RS17300 Genome accession   NZ_CP115218
Coordinates   3123264..3126023 (-) Length   919 a.a.
NCBI ID   WP_003163304.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3110150..3123116 3123264..3126023 flank 148


Gene organization within MGE regions


Location: 3110150..3126023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP46_RS17160 (PCP46_17150) - 3110150..3110989 (-) 840 WP_329046813.1 helix-turn-helix domain-containing protein -
  PCP46_RS17165 (PCP46_17155) - 3110986..3111216 (-) 231 WP_010791987.1 hypothetical protein -
  PCP46_RS17170 (PCP46_17160) - 3111213..3111980 (-) 768 WP_022580272.1 Rha family transcriptional regulator -
  PCP46_RS17175 (PCP46_17165) - 3111977..3112312 (-) 336 WP_015980939.1 hypothetical protein -
  PCP46_RS17180 (PCP46_17170) - 3112305..3112634 (-) 330 WP_015980938.1 hypothetical protein -
  PCP46_RS17185 (PCP46_17175) - 3112631..3112927 (-) 297 WP_015980937.1 hypothetical protein -
  PCP46_RS17190 (PCP46_17180) - 3112920..3113228 (-) 309 WP_015980936.1 hypothetical protein -
  PCP46_RS17195 (PCP46_17185) - 3113225..3113497 (-) 273 WP_329046824.1 hypothetical protein -
  PCP46_RS17200 (PCP46_17190) - 3113494..3113844 (-) 351 WP_058012051.1 hypothetical protein -
  PCP46_RS17205 (PCP46_17195) - 3114149..3114541 (-) 393 WP_031642140.1 hypothetical protein -
  PCP46_RS17210 (PCP46_17200) - 3114750..3114971 (-) 222 WP_015980931.1 Cro/CI family transcriptional regulator -
  PCP46_RS17215 (PCP46_17205) - 3115059..3115733 (+) 675 WP_034014237.1 XRE family transcriptional regulator -
  PCP46_RS17220 (PCP46_17210) - 3115919..3116302 (+) 384 WP_034041438.1 response regulator transcription factor -
  PCP46_RS17225 (PCP46_17215) - 3116305..3116538 (+) 234 WP_003159044.1 hypothetical protein -
  PCP46_RS17230 (PCP46_17220) - 3116638..3116892 (+) 255 WP_019396635.1 hypothetical protein -
  PCP46_RS17235 (PCP46_17225) - 3116889..3117725 (+) 837 WP_329046839.1 prohibitin family protein -
  PCP46_RS17240 (PCP46_17230) - 3117768..3118676 (+) 909 WP_329046841.1 hypothetical protein -
  PCP46_RS17245 (PCP46_17235) - 3118679..3118909 (+) 231 WP_023094535.1 Arc family DNA-binding protein -
  PCP46_RS17250 (PCP46_17240) - 3118912..3119247 (+) 336 WP_023121760.1 hypothetical protein -
  PCP46_RS17255 (PCP46_17245) - 3119244..3119951 (+) 708 WP_329046847.1 hypothetical protein -
  PCP46_RS17260 (PCP46_17250) - 3119948..3120070 (+) 123 WP_015648185.1 hypothetical protein -
  PCP46_RS17265 (PCP46_17255) - 3120070..3120261 (+) 192 WP_050159539.1 hypothetical protein -
  PCP46_RS17270 (PCP46_17260) - 3120258..3120437 (+) 180 WP_034014242.1 hypothetical protein -
  PCP46_RS17275 (PCP46_17265) - 3120434..3120679 (+) 246 WP_034014243.1 hypothetical protein -
  PCP46_RS17280 (PCP46_17270) - 3120676..3121515 (+) 840 WP_051488605.1 hypothetical protein -
  PCP46_RS17285 (PCP46_17275) - 3121518..3121841 (+) 324 WP_034014244.1 ClpX C4-type zinc finger protein -
  PCP46_RS17290 (PCP46_17280) - 3121825..3122067 (+) 243 WP_034014245.1 DUF4224 domain-containing protein -
  PCP46_RS17295 (PCP46_17285) - 3122067..3123116 (+) 1050 WP_329046851.1 tyrosine-type recombinase/integrase -
  PCP46_RS17300 (PCP46_17290) fimV 3123264..3126023 (-) 2760 WP_003163304.1 motility hub landmark protein FimV Machinery gene

Sequence

Protein


Download         Length: 919 a.a.        Molecular weight: 96929.17 Da        Isoelectric Point: 3.9481

>NTDB_id=769456 PCP46_RS17300 WP_003163304.1 3123264..3126023(-) (fimV) [Pseudomonas aeruginosa strain F061]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT
PAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVL
LMILSRRNAQKEKEEAQAFAADTGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAPQVEKTTAQTSDALGEADIYIAYGRF
NQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQ
DELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGDDVQADLKSDSGALDDLTLDSDLDLAASTPADKPVDDL
DFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSL
ADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSATPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLA
RAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2760 bp        

>NTDB_id=769456 PCP46_RS17300 WP_003163304.1 3123264..3126023(-) (fimV) [Pseudomonas aeruginosa strain F061]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCTCCGGCTCCGGTGCGTACCACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAGCTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAATCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGAAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGACAGCACTCGCCGCGAGAACGAAGAACTGCAGAGTCGCATGCAGGATCTGCAGAGCCAGTT
GGACAAGCTGCAGAAGTTGATCCAGCTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCGGCCGCGCAGGCGCCGGCTCAGCCCGGGACT
CCTGCTGCGGCAGCGCCGACTCCTGCTCCAGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCC
CGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTACAGGCGGCAGAGCAGCCGGCACCGA
GCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTG
CTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATACCGGCGAGGAACA
GGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAGCCGCAGGTCGCAGCCGTCG
CTCCGCAGGTCGAGAAGACCACCGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTC
AACCAGGCCGCCGAACTGTTGCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGT
CTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGG
TCGAGCAGCTCAAGTCGCGCTATCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAG
GACGAGCTGGATAGCTTCAGCCTTGACGACCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACA
GGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGGCGGCGACGACGTGCAGGCCGACCTCAAGTCCGACAGCG
GGGCGCTGGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGGCCTCGACCCCGGCGGATAAGCCTGTCGACGATCTC
GACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAAGCATGACGACCTGGGCGATTTCTCCCTGGA
TCTCGACGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGAAGTGCCCGCCGCGGCGCCTG
CCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTG
GCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCA
GTTGGACGAGTTGGCCAGCAACCTTGACGAGCCGAAGAGCGCGACGCCGAGTTTCTCCGCCGAGGATGCAGCGGTCGCCT
CCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCT
CGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCA
GCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

99.674

100

0.997