Detailed information NTG0769449

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QQA21_RS16960
• Genome accession: NZ_CP126955
• Coordinates: 3431248..3432240 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O78:H4 strain APEC E123
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3426248..3437240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQA21_RS16940 (QQA21_16940)	otnK	3427023..3428285 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
QQA21_RS16945 (QQA21_16945)	ygbL	3428282..3428920 (+)	639	WP_001278994.1	aldolase	-
QQA21_RS16950 (QQA21_16950)	ygbM	3428925..3429701 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QQA21_RS16955 (QQA21_16955)	ygbN	3429790..3431154 (+)	1365	WP_000104456.1	GntP family transporter	-
QQA21_RS16960 (QQA21_16960)	rpoS	3431248..3432240 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QQA21_RS16965 (QQA21_16965)	nlpD	3432303..3433397 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QQA21_RS16970 (QQA21_16970)	pcm	3433582..3434208 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QQA21_RS16975 (QQA21_16975)	surE	3434202..3434963 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QQA21_RS16980 (QQA21_16980)	truD	3434944..3435993 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QQA21_RS16985 (QQA21_16985)	ispF	3435990..3436469 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QQA21_RS16990 (QQA21_16990)	ispD	3436469..3437179 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=769449 QQA21_RS16960 WP_000081550.1 3431248..3432240(-) (rpoS) [Escherichia coli O78:H4 strain APEC E123]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=769449 QQA21_RS16960 WP_000081550.1 3431248..3432240(-) (rpoS) [Escherichia coli O78:H4 strain APEC E123]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715