Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QQA22_RS18065 Genome accession   NZ_CP126952
Coordinates   3665015..3665620 (-) Length   201 a.a.
NCBI ID   WP_001195017.1    Uniprot ID   -
Organism   Escherichia coli O78:H4 strain APEC E12049     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3660015..3670620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA22_RS18045 (QQA22_18045) aes 3660156..3661115 (+) 960 WP_289245603.1 acetyl esterase -
  QQA22_RS18050 (QQA22_18050) hemH 3661112..3662074 (-) 963 WP_001250105.1 ferrochelatase -
  QQA22_RS18055 (QQA22_18055) adk 3662206..3662850 (-) 645 WP_001220233.1 adenylate kinase -
  QQA22_RS18060 (QQA22_18060) htpG 3663031..3664905 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QQA22_RS18065 (QQA22_18065) recR 3665015..3665620 (-) 606 WP_001195017.1 recombination mediator RecR Machinery gene
  QQA22_RS18070 (QQA22_18070) ybaB 3665620..3665949 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QQA22_RS18075 (QQA22_18075) dnaX 3666002..3667933 (-) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  QQA22_RS18080 (QQA22_18080) apt 3668062..3668613 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QQA22_RS18085 (QQA22_18085) ybaN 3668766..3669143 (-) 378 WP_001188905.1 DUF454 family protein -
  QQA22_RS18090 (QQA22_18090) priC 3669213..3669740 (+) 528 WP_000844858.1 primosomal replication protein N'' -
  QQA22_RS18095 (QQA22_18095) rsmS 3669754..3669915 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QQA22_RS18100 (QQA22_18100) - 3669968..3670066 (-) 99 Protein_3545 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21972.01 Da        Isoelectric Point: 5.0751

>NTDB_id=769372 QQA22_RS18065 WP_001195017.1 3665015..3665620(-) (recR) [Escherichia coli O78:H4 strain APEC E12049]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEHEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=769372 QQA22_RS18065 WP_001195017.1 3665015..3665620(-) (recR) [Escherichia coli O78:H4 strain APEC E12049]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACACGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.005

0.438