Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQA22_RS15345 Genome accession   NZ_CP126952
Coordinates   3124295..3124924 (-) Length   209 a.a.
NCBI ID   WP_000699018.1    Uniprot ID   -
Organism   Escherichia coli O78:H4 strain APEC E12049     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3119295..3129924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA22_RS15330 (QQA22_15330) helD 3119537..3121591 (-) 2055 WP_001317751.1 DNA helicase IV -
  QQA22_RS15335 (QQA22_15335) yccF 3121714..3122160 (+) 447 WP_001261236.1 YccF domain-containing protein -
  QQA22_RS15340 (QQA22_15340) yccS 3122170..3124332 (+) 2163 WP_000875041.1 YccS family putative transporter -
  QQA22_RS15345 (QQA22_15345) sxy/tfoX 3124295..3124924 (-) 630 WP_000699018.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQA22_RS15350 (QQA22_15350) sulA 3125143..3125652 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  QQA22_RS15355 (QQA22_15355) ompA 3126009..3127049 (+) 1041 WP_001314606.1 porin OmpA -
  QQA22_RS15360 (QQA22_15360) matP 3127125..3127577 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QQA22_RS15365 (QQA22_15365) ycbZ 3127763..3129523 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.10 Da        Isoelectric Point: 9.2180

>NTDB_id=769365 QQA22_RS15345 WP_000699018.1 3124295..3124924(-) (sxy/tfoX) [Escherichia coli O78:H4 strain APEC E12049]
MKILSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=769365 QQA22_RS15345 WP_000699018.1 3124295..3124924(-) (sxy/tfoX) [Escherichia coli O78:H4 strain APEC E12049]
ATGAAAATCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995