Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QQA22_RS02410 Genome accession   NZ_CP126952
Coordinates   508424..509101 (-) Length   225 a.a.
NCBI ID   WP_000178169.1    Uniprot ID   -
Organism   Escherichia coli O78:H4 strain APEC E12049     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 503424..514101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA22_RS02395 (QQA22_02395) chiA 504782..507484 (+) 2703 WP_289245628.1 bifunctional chitinase/lysozyme -
  QQA22_RS02400 (QQA22_02400) bfd 507653..507847 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  QQA22_RS02405 (QQA22_02405) bfr 507919..508395 (+) 477 WP_000675505.1 bacterioferritin -
  QQA22_RS02410 (QQA22_02410) pilD 508424..509101 (-) 678 WP_000178169.1 prepilin peptidase GspO Machinery gene
  QQA22_RS02415 (QQA22_02415) gspM 509101..509562 (-) 462 WP_000597914.1 type II secretion system protein GspM -
  QQA22_RS02420 (QQA22_02420) gspL 509559..510722 (-) 1164 WP_001115245.1 type II secretion system protein GspL -
  QQA22_RS02425 (QQA22_02425) gspK 510737..511720 (-) 984 WP_001058528.1 type II secretion system minor pseudopilin GspK -
  QQA22_RS02430 (QQA22_02430) gspJ 511713..512300 (-) 588 WP_000610629.1 type II secretion system minor pseudopilin GspJ -
  QQA22_RS02435 (QQA22_02435) gspI 512293..512670 (-) 378 WP_001041738.1 type II secretion system minor pseudopilin GspI -
  QQA22_RS02440 (QQA22_02440) gspH 512667..513176 (-) 510 WP_001076031.1 type II secretion system minor pseudopilin GspH -
  QQA22_RS02445 (QQA22_02445) gspG 513184..513621 (-) 438 WP_001202877.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24812.67 Da        Isoelectric Point: 7.9585

>NTDB_id=769329 QQA22_RS02410 WP_000178169.1 508424..509101(-) (pilD) [Escherichia coli O78:H4 strain APEC E12049]
MTMLLPLFILVGFIAGYFVNAMAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQSGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=769329 QQA22_RS02410 WP_000178169.1 508424..509101(-) (pilD) [Escherichia coli O78:H4 strain APEC E12049]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATGGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGCGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGCACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTCTGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCTG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCGTGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTAATTGCCTCACTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCGTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

33.333

100

0.382