Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QQA23_RS23815 Genome accession   NZ_CP126948
Coordinates   4888990..4890819 (-) Length   609 a.a.
NCBI ID   WP_000035580.1    Uniprot ID   B7LU33
Organism   Escherichia coli O78:H4 strain APEC E14033     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4883990..4895819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA23_RS23790 (QQA23_23760) bioP 4884708..4885607 (-) 900 WP_001196241.1 biotin transporter -
  QQA23_RS23795 (QQA23_23765) yigL 4885683..4886483 (-) 801 WP_000285360.1 sugar/pyridoxal phosphate phosphatase YigL -
  QQA23_RS23800 (QQA23_23770) pldB 4886491..4887513 (-) 1023 WP_000487654.1 lysophospholipase L2 -
  QQA23_RS23805 (QQA23_23775) rhtB 4887624..4888244 (+) 621 WP_000171701.1 homoserine/homoserine lactone efflux protein -
  QQA23_RS23810 (QQA23_23780) rhtC 4888306..4888926 (-) 621 WP_000928844.1 threonine export protein RhtC -
  QQA23_RS23815 (QQA23_23785) recQ 4888990..4890819 (-) 1830 WP_000035580.1 ATP-dependent DNA helicase RecQ Machinery gene
  QQA23_RS23820 (QQA23_23790) pldA 4890944..4891813 (-) 870 WP_001259697.1 phospholipase A -
  QQA23_RS23825 (QQA23_23795) yigI 4891978..4892445 (+) 468 WP_059338749.1 acyl-CoA thioesterase YigI -
  QQA23_RS23830 (QQA23_23800) rarD 4892497..4893387 (+) 891 WP_000379996.1 EamA family transporter RarD -
  QQA23_RS23835 (QQA23_23805) - 4893698..4894546 (+) 849 WP_001059675.1 YPO3983 family protein -
  QQA23_RS23840 (QQA23_23810) - 4894543..4895040 (+) 498 WP_000837559.1 DUF943 family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68364.49 Da        Isoelectric Point: 7.0906

>NTDB_id=769311 QQA23_RS23815 WP_000035580.1 4888990..4890819(-) (recQ) [Escherichia coli O78:H4 strain APEC E14033]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=769311 QQA23_RS23815 WP_000035580.1 4888990..4890819(-) (recQ) [Escherichia coli O78:H4 strain APEC E14033]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAGATTATCGACACTGTGCTTTCCGGTCGCGATTGCCTGGTCGTCATGCCCACCGGTGGCGGAAAAT
CCCTTTGCTATCAAATTCCTGCCTTATTGCTAAACGGCCTTACCGTGGTTGTTTCACCGCTGATTTCGTTGATGAAAGAT
CAGGTGGATCAACTGCAAGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAACAGCAACTTGAAGT
GATGACAGGCTGTCGCACCGGGCAAATTCGTCTGCTTTATATCGCCCCGGAACGCCTGATGCTGGATAACTTTCTTGAGC
ATCTGGCGCACTGGAATCCGGTGTTATTAGCCGTTGATGAAGCGCACTGTATCTCCCAATGGGGCCACGATTTCCGCCCG
GAATATGCCGCGCTCGGTCAGTTGCGCCAGCGGTTCCCGACGCTGCCGTTTATGGCGCTGACCGCCACCGCCGACGACAC
CACGCGGCAGGATATCGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATTAGCAGTTTTGACCGTCCGAATATTC
GCTACATGTTGATGGAGAAGTTCAAACCGCTCGATCAGCTGATGCGCTACGTGCAGGAACAACGCGGTAAGTCGGGGATT
ATTTACTGTAATAGTCGTGCGAAAGTAGAAGACACCGCCGCGCGTCTGCAAAGCAAGGGTATCAGCGCAGCGGCTTATCA
CGCCGGGCTTGAAAACGATGTCCGTGCGGACGTGCAGGAAAAATTCCAGCGCGATGACCTGCAAATTGTGGTGGCGACGG
TGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTGCATTTTGATATTCCGCGCAACATTGAATCCTAT
TATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCGGATATGGCGTG
GCTGCGTCGTTGTCTGGAAGAGAAACCGCAGGGGCAGTTACAGGATATCGAACGTCATAAACTCAATGCGATGGGCGCGT
TTGCCGAAGCGCAAACTTGCCGTCGTCTGGTATTGCTGAACTATTTTGGCGAAGGGCGGCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCGAAACAATACGATGGTTCAACCGATGCTCAGATTGCCCTTTCCACCATTGGTCGTGTGAA
TCAGCGGTTTGGGATGGGCTATGTGGTGGAAGTGATTCGTGGCGCTAATAACCAGCGTATCCGCGACTATGGTCATGACA
AACTGAAAGTCTATGGCATGGGCCGTGATAAAAGCCATGAACATTGGGTGAGCGTGATCCGCCAGCTGATTCACCTCGGC
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCTGCGCGTCCGGTGCTGCGCGGCGAATCCTC
TTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATTGCCGATGAAAGCAATGTCCCGCCGTACGTGGTATTTAACGAC
GCAACCTTGATTGAGATGGCGGAACAGATGCCGATCACTGCCAGCGAAATGCTCAGCGTTAACGGCGTTGGGATGCGCAA
GCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTCGATGGCGATGACGAAGAGTAG

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

Helicase conserved C-terminal domain (Helicase_C)

(223-330)

DEAD/DEAH box helicase (DEAD)

(28-187)

HRDC domain (HRDC)

(533-599)

RQC domain (RQC)

(406-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LU33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.372

97.209

0.392