Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP41_RS26500 Genome accession   NZ_CP115208
Coordinates   5668277..5668834 (+) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F066     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5663277..5673834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP41_RS26480 (PCP41_26455) pilR 5664553..5665890 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  PCP41_RS26485 (PCP41_26460) thiO 5665936..5667030 (-) 1095 WP_003134931.1 glycine oxidase ThiO -
  PCP41_RS26490 (PCP41_26465) - 5667165..5667674 (+) 510 WP_003134932.1 GspH/FimT family pseudopilin -
  PCP41_RS26495 (PCP41_26470) - 5667780..5668286 (+) 507 WP_003134935.1 GspH/FimT family pseudopilin -
  PCP41_RS26500 (PCP41_26475) pilV 5668277..5668834 (+) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  PCP41_RS26505 (PCP41_26480) pilW 5668831..5669655 (+) 825 WP_058154737.1 type 4a pilus minor pilin PilW -
  PCP41_RS26510 (PCP41_26485) pilX 5669652..5670239 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  PCP41_RS26515 (PCP41_26490) pilY1 5670251..5673736 (+) 3486 WP_329031275.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=769305 PCP41_RS26500 WP_003110422.1 5668277..5668834(+) (pilV) [Pseudomonas aeruginosa strain F066]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=769305 PCP41_RS26500 WP_003110422.1 5668277..5668834(+) (pilV) [Pseudomonas aeruginosa strain F066]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984