Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QQA23_RS17815 Genome accession   NZ_CP126948
Coordinates   3605354..3605959 (-) Length   201 a.a.
NCBI ID   WP_001195017.1    Uniprot ID   -
Organism   Escherichia coli O78:H4 strain APEC E14033     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3600354..3610959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA23_RS17795 (QQA23_17780) aes 3600495..3601454 (+) 960 WP_000801797.1 acetyl esterase -
  QQA23_RS17800 (QQA23_17785) hemH 3601451..3602413 (-) 963 WP_289245537.1 ferrochelatase -
  QQA23_RS17805 (QQA23_17790) adk 3602545..3603189 (-) 645 WP_001220233.1 adenylate kinase -
  QQA23_RS17810 (QQA23_17795) htpG 3603370..3605244 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QQA23_RS17815 (QQA23_17800) recR 3605354..3605959 (-) 606 WP_001195017.1 recombination mediator RecR Machinery gene
  QQA23_RS17820 (QQA23_17805) ybaB 3605959..3606288 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QQA23_RS17825 (QQA23_17810) dnaX 3606341..3608272 (-) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  QQA23_RS17830 (QQA23_17815) apt 3608401..3608952 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QQA23_RS17835 (QQA23_17820) ybaN 3609105..3609482 (-) 378 WP_001188905.1 DUF454 family protein -
  QQA23_RS17840 (QQA23_17825) priC 3609552..3610079 (+) 528 WP_000844858.1 primosomal replication protein N'' -
  QQA23_RS17845 (QQA23_17830) rsmS 3610093..3610254 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21972.01 Da        Isoelectric Point: 5.0751

>NTDB_id=769289 QQA23_RS17815 WP_001195017.1 3605354..3605959(-) (recR) [Escherichia coli O78:H4 strain APEC E14033]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEHEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=769289 QQA23_RS17815 WP_001195017.1 3605354..3605959(-) (recR) [Escherichia coli O78:H4 strain APEC E14033]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACACGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.005

0.438