Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQA23_RS15080 Genome accession   NZ_CP126948
Coordinates   3063209..3063838 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli O78:H4 strain APEC E14033     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3058209..3068838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA23_RS15065 (QQA23_15060) helD 3058451..3060505 (-) 2055 WP_001317751.1 DNA helicase IV -
  QQA23_RS15070 (QQA23_15065) yccF 3060628..3061074 (+) 447 WP_001261236.1 YccF domain-containing protein -
  QQA23_RS15075 (QQA23_15070) yccS 3061084..3063246 (+) 2163 WP_000875041.1 YccS family putative transporter -
  QQA23_RS15080 (QQA23_15075) sxy/tfoX 3063209..3063838 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQA23_RS15085 (QQA23_15080) sulA 3064057..3064566 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  QQA23_RS15090 (QQA23_15085) ompA 3064923..3065963 (+) 1041 WP_032284986.1 porin OmpA -
  QQA23_RS15095 (QQA23_15090) matP 3066039..3066491 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QQA23_RS15100 (QQA23_15095) ycbZ 3066677..3068437 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=769282 QQA23_RS15080 WP_000839153.1 3063209..3063838(-) (sxy/tfoX) [Escherichia coli O78:H4 strain APEC E14033]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=769282 QQA23_RS15080 WP_000839153.1 3063209..3063838(-) (sxy/tfoX) [Escherichia coli O78:H4 strain APEC E14033]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1