Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP23_RS04765 Genome accession   NZ_CP115207
Coordinates   1003151..1003708 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F067     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 998151..1008708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP23_RS04745 (PCP23_04740) pilR 999427..1000764 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PCP23_RS04750 (PCP23_04745) thiO 1000810..1001904 (-) 1095 WP_034055510.1 glycine oxidase ThiO -
  PCP23_RS04755 (PCP23_04750) - 1002039..1002548 (+) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  PCP23_RS04760 (PCP23_04755) - 1002654..1003160 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP23_RS04765 (PCP23_04760) pilV 1003151..1003708 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP23_RS04770 (PCP23_04765) pilW 1003705..1004529 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP23_RS04775 (PCP23_04770) pilX 1004526..1005113 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP23_RS04780 (PCP23_04775) pilY1 1005125..1008616 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=769251 PCP23_RS04765 WP_003119423.1 1003151..1003708(+) (pilV) [Pseudomonas aeruginosa strain F067]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=769251 PCP23_RS04765 WP_003119423.1 1003151..1003708(+) (pilV) [Pseudomonas aeruginosa strain F067]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995