Detailed information NTG0076922

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LPH32_RS13325
• Genome accession: NZ_AP025214
• Coordinates: 2718030..2719055 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 2017.09.02CC
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2713030..2724055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPH32_RS13305 (VEGS19_A25250)	metJ	2714215..2714532 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LPH32_RS13310 (VEGS19_A25260)	yiiX	2714592..2715200 (+)	609	WP_000702299.1	YiiX family permuted papain-like enzyme	-
LPH32_RS13315 (VEGS19_A25270)	rpmE	2715261..2715473 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LPH32_RS13320 (VEGS19_A25280)	priA	2715676..2717874 (+)	2199	WP_053290818.1	primosomal protein N'	Machinery gene
LPH32_RS13325 (VEGS19_A25290)	cytR	2718030..2719055 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LPH32_RS13330 (VEGS19_A25300)	ftsN	2719147..2720106 (+)	960	WP_000068818.1	cell division protein FtsN	-
LPH32_RS13335 (VEGS19_A25310)	hslV	2720199..2720729 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LPH32_RS13340 (VEGS19_A25320)	hslU	2720739..2722070 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
LPH32_RS13345 (VEGS19_A25330)	menA	2722137..2723063 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LPH32_RS13350 (VEGS19_A25340)	rraA	2723156..2723641 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LPH32_RS13355 (VEGS19_A25350)	zapB	2723726..2723971 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=76922 LPH32_RS13325 WP_000644904.1 2718030..2719055(+) (cytR) [Escherichia coli strain 2017.09.02CC]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=76922 LPH32_RS13325 WP_000644904.1 2718030..2719055(+) (cytR) [Escherichia coli strain 2017.09.02CC]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACTATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTCCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCTGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGTGATGTGATGGCGCTCGGCGCACTTTCGCAGGCAAAACGCCA
GGGGCTAAAAGTACCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628