Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QQA24_RS15300 Genome accession   NZ_CP126946
Coordinates   3148637..3149113 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O78:H51 strain APEC E18005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3143637..3154113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA24_RS15285 (QQA24_15285) - 3144052..3146898 (+) 2847 WP_039023336.1 Ag43/Cah family autotransporter adhesin -
  QQA24_RS15290 (QQA24_15290) - 3147226..3148044 (+) 819 WP_001610805.1 DUF932 domain-containing protein -
  QQA24_RS15295 (QQA24_15295) - 3148136..3148621 (+) 486 WP_000214413.1 antirestriction protein -
  QQA24_RS15300 (QQA24_15300) radC 3148637..3149113 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  QQA24_RS15305 (QQA24_15305) - 3149176..3149397 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  QQA24_RS15310 (QQA24_15310) - 3149471..3149878 (+) 408 WP_001389100.1 type IV toxin-antitoxin system YeeU family antitoxin -
  QQA24_RS15315 (QQA24_15315) - 3150420..3151667 (-) 1248 WP_039023397.1 oligosaccharide MFS transporter -
  QQA24_RS15320 (QQA24_15320) - 3151739..3152653 (-) 915 WP_001274887.1 aminoimidazole riboside kinase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=769190 QQA24_RS15300 WP_001186773.1 3148637..3149113(+) (radC) [Escherichia coli O78:H51 strain APEC E18005]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=769190 QQA24_RS15300 WP_001186773.1 3148637..3149113(+) (radC) [Escherichia coli O78:H51 strain APEC E18005]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392