Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQA28_RS15775 Genome accession   NZ_CP126944
Coordinates   3160413..3161042 (-) Length   209 a.a.
NCBI ID   WP_000839137.1    Uniprot ID   -
Organism   Escherichia coli O1:K1:H7 strain APEC E16002     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3155413..3166042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA28_RS15760 (QQA28_15760) helD 3155655..3157709 (-) 2055 WP_001350178.1 DNA helicase IV -
  QQA28_RS15765 (QQA28_15765) yccF 3157832..3158278 (+) 447 WP_001261236.1 YccF domain-containing protein -
  QQA28_RS15770 (QQA28_15770) yccS 3158288..3160450 (+) 2163 WP_000875041.1 YccS family putative transporter -
  QQA28_RS15775 (QQA28_15775) sxy/tfoX 3160413..3161042 (-) 630 WP_000839137.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQA28_RS15780 (QQA28_15780) sulA 3161261..3161770 (+) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  QQA28_RS15785 (QQA28_15785) ompA 3162126..3163166 (+) 1041 WP_001350588.1 porin OmpA -
  QQA28_RS15790 (QQA28_15790) matP 3163244..3163696 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  QQA28_RS15795 (QQA28_15795) ycbZ 3163882..3165642 (+) 1761 WP_000156501.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24055.99 Da        Isoelectric Point: 9.4081

>NTDB_id=769113 QQA28_RS15775 WP_000839137.1 3160413..3161042(-) (sxy/tfoX) [Escherichia coli O1:K1:H7 strain APEC E16002]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAGLE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=769113 QQA28_RS15775 WP_000839137.1 3160413..3161042(-) (sxy/tfoX) [Escherichia coli O1:K1:H7 strain APEC E16002]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGGACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

98.565

100

0.986