Detailed information NTG0769089

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QQA28_RS05960
• Genome accession: NZ_CP126944
• Coordinates: 1228226..1229218 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O1:K1:H7 strain APEC E16002
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1223226..1234218

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQA28_RS05930 (QQA28_05930)	ispD	1223287..1223997 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QQA28_RS05935 (QQA28_05935)	ispF	1223997..1224476 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QQA28_RS05940 (QQA28_05940)	truD	1224473..1225522 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
QQA28_RS05945 (QQA28_05945)	surE	1225503..1226264 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QQA28_RS05950 (QQA28_05950)	pcm	1226258..1226884 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
QQA28_RS05955 (QQA28_05955)	nlpD	1227069..1228163 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QQA28_RS05960 (QQA28_05960)	rpoS	1228226..1229218 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QQA28_RS05965 (QQA28_05965)	-	1229396..1229947 (-)	552	WP_001179442.1	flavodoxin family protein	-
QQA28_RS05970 (QQA28_05970)	-	1230172..1231215 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
QQA28_RS05975 (QQA28_05975)	ygbN	1231358..1232722 (-)	1365	WP_000104443.1	GntP family transporter	-
QQA28_RS05980 (QQA28_05980)	ygbM	1232811..1233587 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=769089 QQA28_RS05960 WP_000081550.1 1228226..1229218(+) (rpoS) [Escherichia coli O1:K1:H7 strain APEC E16002]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=769089 QQA28_RS05960 WP_000081550.1 1228226..1229218(+) (rpoS) [Escherichia coli O1:K1:H7 strain APEC E16002]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715