Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QQA29_RS18300 Genome accession   NZ_CP126942
Coordinates   3678712..3679317 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O1:K1:H7 strain APEC E18006     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3673712..3684317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA29_RS18280 (QQA29_18280) aes 3673853..3674812 (+) 960 WP_000801795.1 acetyl esterase -
  QQA29_RS18285 (QQA29_18285) hemH 3674809..3675771 (-) 963 WP_001250129.1 ferrochelatase -
  QQA29_RS18290 (QQA29_18290) adk 3675903..3676547 (-) 645 WP_001331495.1 adenylate kinase -
  QQA29_RS18295 (QQA29_18295) htpG 3676728..3678602 (-) 1875 WP_000678211.1 molecular chaperone HtpG -
  QQA29_RS18300 (QQA29_18300) recR 3678712..3679317 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QQA29_RS18305 (QQA29_18305) ybaB 3679317..3679646 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QQA29_RS18310 (QQA29_18310) dnaX 3679699..3681630 (-) 1932 WP_000122049.1 DNA polymerase III subunit gamma/tau -
  QQA29_RS18315 (QQA29_18315) apt 3681759..3682310 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QQA29_RS18320 (QQA29_18320) ybaN 3682463..3682840 (-) 378 WP_001188900.1 DUF454 family protein -
  QQA29_RS18325 (QQA29_18325) priC 3682910..3683437 (+) 528 WP_000844868.1 primosomal replication protein N'' -
  QQA29_RS18330 (QQA29_18330) rsmS 3683451..3683612 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QQA29_RS18335 (QQA29_18335) - 3683665..3683763 (-) 99 Protein_3600 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=769032 QQA29_RS18300 WP_001195025.1 3678712..3679317(-) (recR) [Escherichia coli O1:K1:H7 strain APEC E18006]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=769032 QQA29_RS18300 WP_001195025.1 3678712..3679317(-) (recR) [Escherichia coli O1:K1:H7 strain APEC E18006]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443