Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQA29_RS15775 Genome accession   NZ_CP126942
Coordinates   3160303..3160932 (-) Length   209 a.a.
NCBI ID   WP_000839137.1    Uniprot ID   -
Organism   Escherichia coli O1:K1:H7 strain APEC E18006     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3155303..3165932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA29_RS15760 (QQA29_15760) helD 3155545..3157599 (-) 2055 WP_001350178.1 DNA helicase IV -
  QQA29_RS15765 (QQA29_15765) yccF 3157722..3158168 (+) 447 WP_001261236.1 YccF domain-containing protein -
  QQA29_RS15770 (QQA29_15770) yccS 3158178..3160340 (+) 2163 WP_000875041.1 YccS family putative transporter -
  QQA29_RS15775 (QQA29_15775) sxy/tfoX 3160303..3160932 (-) 630 WP_000839137.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQA29_RS15780 (QQA29_15780) sulA 3161151..3161660 (+) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  QQA29_RS15785 (QQA29_15785) ompA 3162016..3163056 (+) 1041 WP_001350588.1 porin OmpA -
  QQA29_RS15790 (QQA29_15790) matP 3163134..3163586 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  QQA29_RS15795 (QQA29_15795) ycbZ 3163772..3165532 (+) 1761 WP_000156501.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24055.99 Da        Isoelectric Point: 9.4081

>NTDB_id=769025 QQA29_RS15775 WP_000839137.1 3160303..3160932(-) (sxy/tfoX) [Escherichia coli O1:K1:H7 strain APEC E18006]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAGLE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=769025 QQA29_RS15775 WP_000839137.1 3160303..3160932(-) (sxy/tfoX) [Escherichia coli O1:K1:H7 strain APEC E18006]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGGACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

98.565

100

0.986