Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PCP52_RS14700 Genome accession   NZ_CP115199
Coordinates   3210606..3211241 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain F074     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3205606..3216241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP52_RS14670 (PCP52_14660) murB 3206704..3207723 (-) 1020 WP_329001131.1 UDP-N-acetylmuramate dehydrogenase -
  PCP52_RS14675 (PCP52_14665) - 3207720..3208184 (-) 465 WP_329001132.1 low molecular weight protein-tyrosine-phosphatase -
  PCP52_RS14680 (PCP52_14670) kdsB 3208184..3208948 (-) 765 WP_126517693.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PCP52_RS14685 (PCP52_14675) - 3208948..3209133 (-) 186 WP_003091157.1 Trm112 family protein -
  PCP52_RS14690 (PCP52_14680) lpxK 3209171..3210169 (-) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  PCP52_RS14695 (PCP52_14685) - 3210169..3210609 (-) 441 WP_003091161.1 ExbD/TolR family protein -
  PCP52_RS14700 (PCP52_14690) exbB 3210606..3211241 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PCP52_RS14705 (PCP52_14695) comA 3211314..3213539 (-) 2226 WP_329001138.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PCP52_RS14710 (PCP52_14700) - 3213670..3214203 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PCP52_RS14715 (PCP52_14705) - 3214307..3215526 (+) 1220 WP_196741074.1 IS3 family transposase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=769022 PCP52_RS14700 WP_003091163.1 3210606..3211241(-) (exbB) [Pseudomonas aeruginosa strain F074]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=769022 PCP52_RS14700 WP_003091163.1 3210606..3211241(-) (exbB) [Pseudomonas aeruginosa strain F074]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81