Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP52_RS00780 Genome accession   NZ_CP115199
Coordinates   170872..171429 (-) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain F074     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 165872..176429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP52_RS00765 (PCP52_00765) pilY1 165970..169455 (-) 3486 WP_043103572.1 type 4a pilus biogenesis protein PilY1 -
  PCP52_RS00770 (PCP52_00770) pilX 169467..170054 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PCP52_RS00775 (PCP52_00775) pilW 170051..170875 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP52_RS00780 (PCP52_00780) pilV 170872..171429 (-) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  PCP52_RS00785 (PCP52_00785) - 171420..171926 (-) 507 WP_003110423.1 GspH/FimT family pseudopilin -
  PCP52_RS00790 (PCP52_00790) - 172032..172541 (-) 510 WP_009316266.1 GspH/FimT family pseudopilin -
  PCP52_RS00795 (PCP52_00795) thiO 172676..173770 (+) 1095 WP_031756968.1 glycine oxidase ThiO -
  PCP52_RS00800 (PCP52_00800) pilR 173816..175153 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=769008 PCP52_RS00780 WP_003094697.1 170872..171429(-) (pilV) [Pseudomonas aeruginosa strain F074]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=769008 PCP52_RS00780 WP_003094697.1 170872..171429(-) (pilV) [Pseudomonas aeruginosa strain F074]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978