Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PCP31_RS19850 Genome accession   NZ_CP115198
Coordinates   4261537..4262172 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain F075     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4256537..4267172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP31_RS19835 (PCP31_19840) - 4257243..4258487 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  PCP31_RS19840 (PCP31_19845) - 4258575..4259108 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PCP31_RS19845 (PCP31_19850) comA 4259239..4261464 (+) 2226 WP_003119806.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PCP31_RS19850 (PCP31_19855) exbB 4261537..4262172 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PCP31_RS19855 (PCP31_19860) - 4262169..4262609 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  PCP31_RS19860 (PCP31_19865) lpxK 4262609..4263607 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  PCP31_RS19865 (PCP31_19870) - 4263645..4263830 (+) 186 WP_003091157.1 Trm112 family protein -
  PCP31_RS19870 (PCP31_19875) kdsB 4263830..4264594 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PCP31_RS19875 (PCP31_19880) - 4264594..4265058 (+) 465 WP_004350898.1 low molecular weight protein-tyrosine-phosphatase -
  PCP31_RS19880 (PCP31_19885) murB 4265055..4266074 (+) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=769000 PCP31_RS19850 WP_003091163.1 4261537..4262172(+) (exbB) [Pseudomonas aeruginosa strain F075]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=769000 PCP31_RS19850 WP_003091163.1 4261537..4262172(+) (exbB) [Pseudomonas aeruginosa strain F075]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81