Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   PCP15_RS15135 Genome accession   NZ_CP115196
Coordinates   3225679..3228438 (-) Length   919 a.a.
NCBI ID   WP_003163304.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F076     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3213428..3225531 3225679..3228438 flank 148


Gene organization within MGE regions


Location: 3213428..3228438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP15_RS15015 (PCP15_15025) - 3213428..3214267 (-) 840 WP_023086959.1 helix-turn-helix domain-containing protein -
  PCP15_RS15020 (PCP15_15030) - 3214264..3214494 (-) 231 WP_010791987.1 hypothetical protein -
  PCP15_RS15025 (PCP15_15035) - 3214491..3215255 (-) 765 WP_033983181.1 Rha family transcriptional regulator -
  PCP15_RS15030 (PCP15_15040) - 3215252..3215485 (-) 234 WP_033955708.1 hypothetical protein -
  PCP15_RS15035 (PCP15_15045) - 3215478..3215744 (-) 267 WP_223882064.1 hypothetical protein -
  PCP15_RS15040 (PCP15_15050) - 3215753..3216061 (-) 309 WP_055327987.1 hypothetical protein -
  PCP15_RS15045 (PCP15_15055) - 3216058..3216345 (-) 288 WP_003119033.1 DUF3077 domain-containing protein -
  PCP15_RS15050 (PCP15_15060) - 3216342..3216653 (-) 312 WP_019486514.1 hypothetical protein -
  PCP15_RS15055 (PCP15_15065) - 3217065..3217400 (-) 336 WP_058164184.1 hypothetical protein -
  PCP15_RS15060 (PCP15_15070) - 3217513..3218361 (+) 849 WP_070410934.1 LexA family transcriptional regulator -
  PCP15_RS15065 (PCP15_15075) - 3218482..3218871 (+) 390 WP_034063245.1 LuxR C-terminal-related transcriptional regulator -
  PCP15_RS15070 (PCP15_15080) - 3218874..3219107 (+) 234 WP_021205288.1 hypothetical protein -
  PCP15_RS15075 (PCP15_15085) - 3219627..3219893 (+) 267 WP_021205287.1 hypothetical protein -
  PCP15_RS15080 (PCP15_15090) - 3219890..3220657 (+) 768 WP_021205286.1 Rha family transcriptional regulator -
  PCP15_RS15085 (PCP15_15095) - 3220737..3220967 (+) 231 WP_031637080.1 Arc family DNA-binding protein -
  PCP15_RS15090 (PCP15_15100) - 3220970..3221848 (+) 879 WP_169311278.1 hypothetical protein -
  PCP15_RS15095 (PCP15_15105) - 3221845..3222372 (+) 528 WP_023083761.1 hypothetical protein -
  PCP15_RS15100 (PCP15_15110) - 3222485..3222676 (+) 192 WP_050159539.1 hypothetical protein -
  PCP15_RS15105 (PCP15_15115) - 3222673..3222852 (+) 180 WP_034014242.1 hypothetical protein -
  PCP15_RS15110 (PCP15_15120) - 3222849..3223094 (+) 246 WP_034014243.1 hypothetical protein -
  PCP15_RS15115 (PCP15_15125) - 3223091..3223930 (+) 840 WP_051488605.1 hypothetical protein -
  PCP15_RS15120 (PCP15_15130) - 3223933..3224256 (+) 324 WP_034014244.1 ClpX C4-type zinc finger protein -
  PCP15_RS15125 (PCP15_15135) - 3224240..3224482 (+) 243 WP_003158850.1 DUF4224 domain-containing protein -
  PCP15_RS15130 (PCP15_15140) - 3224482..3225531 (+) 1050 WP_042929192.1 tyrosine-type recombinase/integrase -
  PCP15_RS15135 (PCP15_15145) fimV 3225679..3228438 (-) 2760 WP_003163304.1 motility hub landmark protein FimV Machinery gene

Sequence

Protein


Download         Length: 919 a.a.        Molecular weight: 96929.17 Da        Isoelectric Point: 3.9481

>NTDB_id=768950 PCP15_RS15135 WP_003163304.1 3225679..3228438(-) (fimV) [Pseudomonas aeruginosa strain F076]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT
PAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVL
LMILSRRNAQKEKEEAQAFAADTGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAPQVEKTTAQTSDALGEADIYIAYGRF
NQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQ
DELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGDDVQADLKSDSGALDDLTLDSDLDLAASTPADKPVDDL
DFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSL
ADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSATPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLA
RAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2760 bp        

>NTDB_id=768950 PCP15_RS15135 WP_003163304.1 3225679..3228438(-) (fimV) [Pseudomonas aeruginosa strain F076]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCTCCGGCTCCGGTGCGTACCACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAGCTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAATCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGAAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGACAGCACTCGCCGCGAGAACGAAGAACTGCAGAGTCGCATGCAGGATCTGCAGAGCCAGTT
GGACAAGCTGCAGAAGTTGATCCAGCTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCGGCCGCGCAGGCGCCGGCTCAGCCCGGGACT
CCTGCTGCGGCAGCGCCGACTCCTGCTCCAGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCC
CGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTACAGGCGGCAGAGCAGCCGGCACCGA
GCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTG
CTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATACCGGCGAGGAACA
GGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAGCCGCAGGTCGCAGCCGTCG
CTCCGCAGGTCGAGAAGACCACCGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTC
AACCAGGCCGCCGAACTGTTGCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGT
CTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGG
TCGAGCAGCTCAAGTCGCGCTATCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAG
GACGAGCTGGATAGCTTCAGCCTTGACGACCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACA
GGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGGCGGCGACGACGTGCAGGCCGACCTCAAGTCCGACAGCG
GGGCGCTGGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGGCCTCGACCCCGGCGGATAAGCCTGTCGACGATCTC
GACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAAGCATGACGACCTGGGCGATTTCTCCCTGGA
TCTCGACGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGAAGTGCCCGCCGCGGCGCCTG
CCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTG
GCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCA
GTTGGACGAGTTGGCCAGCAACCTTGACGAGCCGAAGAGCGCGACGCCGAGTTTCTCCGCCGAGGATGCAGCGGTCGCCT
CCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCT
CGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCA
GCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

99.674

100

0.997