Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QQA30_RS18555 Genome accession   NZ_CP126940
Coordinates   3724732..3725337 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O2:K1:H7 strain APEC E18055     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3719732..3730337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA30_RS18535 (QQA30_18535) aes 3719873..3720832 (+) 960 WP_000801795.1 acetyl esterase -
  QQA30_RS18540 (QQA30_18540) hemH 3720829..3721791 (-) 963 WP_001250129.1 ferrochelatase -
  QQA30_RS18545 (QQA30_18545) adk 3721923..3722567 (-) 645 WP_001331495.1 adenylate kinase -
  QQA30_RS18550 (QQA30_18550) htpG 3722748..3724622 (-) 1875 WP_000678211.1 molecular chaperone HtpG -
  QQA30_RS18555 (QQA30_18555) recR 3724732..3725337 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QQA30_RS18560 (QQA30_18560) ybaB 3725337..3725666 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QQA30_RS18565 (QQA30_18565) dnaX 3725719..3727650 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  QQA30_RS18570 (QQA30_18570) apt 3727779..3728330 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QQA30_RS18575 (QQA30_18575) ybaN 3728483..3728860 (-) 378 WP_001188900.1 DUF454 family protein -
  QQA30_RS18580 (QQA30_18580) priC 3728930..3729457 (+) 528 WP_000859698.1 primosomal replication protein N'' -
  QQA30_RS18585 (QQA30_18585) rsmS 3729471..3729632 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QQA30_RS18590 (QQA30_18590) - 3729685..3729783 (-) 99 Protein_3647 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=768945 QQA30_RS18555 WP_001195025.1 3724732..3725337(-) (recR) [Escherichia coli O2:K1:H7 strain APEC E18055]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=768945 QQA30_RS18555 WP_001195025.1 3724732..3725337(-) (recR) [Escherichia coli O2:K1:H7 strain APEC E18055]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443