Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQA30_RS16040 Genome accession   NZ_CP126940
Coordinates   3206217..3206846 (-) Length   209 a.a.
NCBI ID   WP_000839137.1    Uniprot ID   -
Organism   Escherichia coli O2:K1:H7 strain APEC E18055     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3201217..3211846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA30_RS16025 (QQA30_16025) helD 3201459..3203513 (-) 2055 WP_001350178.1 DNA helicase IV -
  QQA30_RS16030 (QQA30_16030) yccF 3203636..3204082 (+) 447 WP_001261236.1 YccF domain-containing protein -
  QQA30_RS16035 (QQA30_16035) yccS 3204092..3206254 (+) 2163 WP_000875041.1 YccS family putative transporter -
  QQA30_RS16040 (QQA30_16040) sxy/tfoX 3206217..3206846 (-) 630 WP_000839137.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQA30_RS16045 (QQA30_16045) sulA 3207065..3207574 (+) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  QQA30_RS16050 (QQA30_16050) ompA 3207930..3208970 (+) 1041 WP_001350588.1 porin OmpA -
  QQA30_RS16055 (QQA30_16055) matP 3209048..3209500 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  QQA30_RS16060 (QQA30_16060) ycbZ 3209686..3211446 (+) 1761 WP_000156501.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24055.99 Da        Isoelectric Point: 9.4081

>NTDB_id=768938 QQA30_RS16040 WP_000839137.1 3206217..3206846(-) (sxy/tfoX) [Escherichia coli O2:K1:H7 strain APEC E18055]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAGLE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=768938 QQA30_RS16040 WP_000839137.1 3206217..3206846(-) (sxy/tfoX) [Escherichia coli O2:K1:H7 strain APEC E18055]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGGACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

98.565

100

0.986