Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PCP55_RS25975 Genome accession   NZ_CP115192
Coordinates   5448591..5449226 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain F078     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5443591..5454226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP55_RS25960 (PCP55_25945) - 5444297..5445541 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  PCP55_RS25965 (PCP55_25950) - 5445629..5446162 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PCP55_RS25970 (PCP55_25955) comA 5446293..5448518 (+) 2226 WP_023464909.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PCP55_RS25975 (PCP55_25960) exbB 5448591..5449226 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PCP55_RS25980 (PCP55_25965) - 5449223..5449663 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  PCP55_RS25985 (PCP55_25970) lpxK 5449663..5450661 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  PCP55_RS25990 (PCP55_25975) - 5450699..5450884 (+) 186 WP_003091157.1 Trm112 family protein -
  PCP55_RS25995 (PCP55_25980) kdsB 5450884..5451648 (+) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PCP55_RS26000 (PCP55_25985) - 5451648..5452112 (+) 465 WP_004350898.1 low molecular weight protein-tyrosine-phosphatase -
  PCP55_RS26005 (PCP55_25990) murB 5452109..5453128 (+) 1020 WP_014602712.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=768903 PCP55_RS25975 WP_003091163.1 5448591..5449226(+) (exbB) [Pseudomonas aeruginosa strain F078]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=768903 PCP55_RS25975 WP_003091163.1 5448591..5449226(+) (exbB) [Pseudomonas aeruginosa strain F078]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCTATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81