Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP55_RS05545 Genome accession   NZ_CP115192
Coordinates   1092758..1093315 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F078     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1087758..1098315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP55_RS05525 (PCP55_05525) pilR 1089034..1090371 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PCP55_RS05530 (PCP55_05530) thiO 1090417..1091511 (-) 1095 WP_010895678.1 glycine oxidase ThiO -
  PCP55_RS05535 (PCP55_05535) - 1091646..1092155 (+) 510 WP_003112829.1 GspH/FimT family pseudopilin -
  PCP55_RS05540 (PCP55_05540) - 1092261..1092767 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP55_RS05545 (PCP55_05545) pilV 1092758..1093315 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP55_RS05550 (PCP55_05550) pilW 1093312..1094136 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP55_RS05555 (PCP55_05555) pilX 1094133..1094720 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP55_RS05560 (PCP55_05560) pilY1 1094732..1098223 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=768882 PCP55_RS05545 WP_003119423.1 1092758..1093315(+) (pilV) [Pseudomonas aeruginosa strain F078]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=768882 PCP55_RS05545 WP_003119423.1 1092758..1093315(+) (pilV) [Pseudomonas aeruginosa strain F078]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995