Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP66_RS24355 Genome accession   NZ_CP115191
Coordinates   5094209..5094766 (+) Length   185 a.a.
NCBI ID   WP_003102600.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LRJ32     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5089209..5099766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP66_RS24335 (PCP66_24300) pilR 5090485..5091822 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PCP66_RS24340 (PCP66_24305) thiO 5091868..5092962 (-) 1095 WP_020750388.1 glycine oxidase ThiO -
  PCP66_RS24345 (PCP66_24310) - 5093097..5093606 (+) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  PCP66_RS24350 (PCP66_24315) - 5093712..5094218 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP66_RS24355 (PCP66_24320) pilV 5094209..5094766 (+) 558 WP_003102600.1 type 4a pilus minor pilin PilV Machinery gene
  PCP66_RS24360 (PCP66_24325) pilW 5094763..5095587 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP66_RS24365 (PCP66_24330) pilX 5095584..5096171 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  PCP66_RS24370 (PCP66_24335) pilY1 5096183..5099674 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20047.13 Da        Isoelectric Point: 8.2254

>NTDB_id=768859 PCP66_RS24355 WP_003102600.1 5094209..5094766(+) (pilV) [Pseudomonas aeruginosa strain LRJ32]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVDRNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=768859 PCP66_RS24355 WP_003102600.1 5094209..5094766(+) (pilV) [Pseudomonas aeruginosa strain LRJ32]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGATCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989