Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxP   Type   Regulator
Locus tag   O8413_RS17375 Genome accession   NZ_CP115189
Coordinates   463935..465032 (-) Length   365 a.a.
NCBI ID   WP_004726763.1    Uniprot ID   A0A0Q2SGB9
Organism   Vibrio furnissii strain MT14     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context


Location: 458935..470032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O8413_RS17355 (O8413_17355) - 459489..459860 (+) 372 WP_014257415.1 NirD/YgiW/YdeI family stress tolerance protein -
  O8413_RS17360 (O8413_17360) - 460012..460536 (+) 525 WP_004726759.1 hypothetical protein -
  O8413_RS17365 (O8413_17365) - 460661..461341 (+) 681 WP_004726760.1 flagellar brake protein -
  O8413_RS17370 (O8413_17370) luxQ 461338..463914 (-) 2577 WP_232658977.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  O8413_RS17375 (O8413_17375) luxP 463935..465032 (-) 1098 WP_004726763.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  O8413_RS17380 (O8413_17380) - 465452..465742 (-) 291 WP_004726765.1 GIY-YIG nuclease family protein -
  O8413_RS17385 (O8413_17385) - 465753..466388 (-) 636 WP_004726766.1 YceH family protein -
  O8413_RS17390 (O8413_17390) - 466432..466629 (-) 198 WP_283513863.1 hypothetical protein -
  O8413_RS17395 (O8413_17395) - 466819..467136 (+) 318 WP_004726770.1 DUF496 family protein -
  O8413_RS17400 (O8413_17400) - 467298..468266 (-) 969 WP_283513864.1 tyrosine-type recombinase/integrase -
  O8413_RS17405 (O8413_17405) - 468552..469223 (+) 672 WP_283513865.1 hypothetical protein -
  O8413_RS17410 (O8413_17410) - 469226..469360 (+) 135 WP_283514022.1 DUF3265 domain-containing protein -
  O8413_RS17415 (O8413_17415) - 469373..469702 (+) 330 WP_283513866.1 hypothetical protein -
  O8413_RS17420 (O8413_17420) - 469703..469816 (+) 114 WP_283514023.1 DUF3265 domain-containing protein -

Sequence


Protein


Download         Length: 365 a.a.        Molecular weight: 41539.74 Da        Isoelectric Point: 5.2793

>NTDB_id=768835 O8413_RS17375 WP_004726763.1 463935..465032(-) (luxP) [Vibrio furnissii strain MT14]
MKKTLFLSLLLGFTPFASSYSSQVLNGYWHYQEFLNANPQQKALTESLSDAVRQSSQRLTVKQQTPVTISVVYPGQQISD
YWVRNIKAFEMRLEELGIEYQINQVFTRPNQDTRQQSLSLMEAVKNNTDYLIFTLDTTRHRKFIEHVLNSSPTKLILQNI
TTPVRDWDERQPMMYVGFDHELGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMESTGDYQLASSYYTKAT
QESGYEATVNIVKNDPDIKFIYACSTDVALGAAKALQALKREDIQVNGWGGGSAELEALDEGHLDVTVMRINDDTGIAMA
EAIKRDLEGLAVPVVYSGDFEIVTKDDQPKKIGLFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=768835 O8413_RS17375 WP_004726763.1 463935..465032(-) (luxP) [Vibrio furnissii strain MT14]
ATGAAGAAAACGCTTTTTCTTTCTCTTTTACTTGGTTTCACTCCTTTTGCCTCTTCGTATTCATCACAAGTGCTGAATGG
TTACTGGCATTATCAGGAATTTCTGAATGCCAATCCGCAACAAAAGGCACTGACGGAGTCGTTGTCTGATGCGGTGCGTC
AGTCGTCTCAGCGGCTGACGGTCAAACAACAAACGCCGGTGACCATTTCGGTGGTTTATCCGGGGCAGCAGATCTCCGAT
TACTGGGTGCGCAACATCAAAGCGTTTGAAATGCGATTGGAAGAGTTAGGCATTGAATACCAGATTAATCAGGTGTTTAC
GCGCCCGAACCAAGACACTCGTCAACAAAGCTTGTCGTTGATGGAAGCGGTGAAGAACAACACGGATTATTTGATTTTCA
CGCTGGATACAACGCGCCACCGCAAGTTTATTGAACACGTTCTGAATTCGTCACCGACCAAATTGATTTTGCAGAATATC
ACCACGCCGGTTCGAGACTGGGATGAACGCCAGCCGATGATGTACGTTGGGTTTGACCATGAACTCGGTGCGCAGCAACT
CGCACAGTATTATCGCGAGCATGTGCCCAAAGGCAGCAAGTATTCGGTGCTGTATTTTTCTGAAGGGTACGTCAGCGATG
CGCGTGGCGACACTTTCATTCAGCAGATGGAAAGCACGGGTGATTACCAGCTGGCCTCGTCGTATTACACCAAAGCGACA
CAAGAAAGTGGCTATGAAGCCACCGTTAACATTGTCAAAAATGACCCAGATATTAAATTTATTTACGCCTGTTCCACTGA
TGTGGCACTGGGCGCAGCCAAGGCGCTACAAGCGTTAAAACGTGAAGATATTCAGGTGAATGGCTGGGGTGGTGGCTCGG
CAGAACTAGAAGCCTTGGATGAAGGTCATCTTGATGTTACTGTCATGAGAATCAATGATGATACCGGCATTGCGATGGCG
GAAGCGATCAAACGTGATTTGGAAGGTTTGGCCGTGCCCGTGGTGTATTCCGGTGACTTTGAGATCGTGACCAAAGACGA
TCAGCCGAAAAAAATTGGTTTGTTTAAGCAACGCGCCTTTCGTTATTCCGACCGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.411

100

0.704