Detailed information NTG0768830

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QQA31_RS05970
• Genome accession: NZ_CP126937
• Coordinates: 1227206..1228198 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O2:K1:H4 strain APEC E19019
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1222206..1233198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQA31_RS05940 (QQA31_05940)	ispD	1222267..1222977 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QQA31_RS05945 (QQA31_05945)	ispF	1222977..1223456 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QQA31_RS05950 (QQA31_05950)	truD	1223453..1224502 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
QQA31_RS05955 (QQA31_05955)	surE	1224483..1225244 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QQA31_RS05960 (QQA31_05960)	pcm	1225238..1225864 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
QQA31_RS05965 (QQA31_05965)	nlpD	1226049..1227143 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QQA31_RS05970 (QQA31_05970)	rpoS	1227206..1228198 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QQA31_RS05975 (QQA31_05975)	-	1228376..1228927 (-)	552	WP_001179442.1	flavodoxin family protein	-
QQA31_RS05980 (QQA31_05980)	-	1229152..1230195 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
QQA31_RS05985 (QQA31_05985)	ygbN	1230338..1231702 (-)	1365	WP_000104443.1	GntP family transporter	-
QQA31_RS05990 (QQA31_05990)	ygbM	1231791..1232567 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=768830 QQA31_RS05970 WP_000081550.1 1227206..1228198(+) (rpoS) [Escherichia coli O2:K1:H4 strain APEC E19019]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=768830 QQA31_RS05970 WP_000081550.1 1227206..1228198(+) (rpoS) [Escherichia coli O2:K1:H4 strain APEC E19019]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715