Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   O8413_RS13790 Genome accession   NZ_CP115188
Coordinates   2947000..2947518 (+) Length   172 a.a.
NCBI ID   WP_014205765.1    Uniprot ID   A0A0Q2V091
Organism   Vibrio furnissii strain MT14     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2942000..2952518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O8413_RS13780 (O8413_13780) gshA 2944802..2946367 (+) 1566 WP_283512688.1 glutamate--cysteine ligase -
  O8413_RS13785 (O8413_13785) - 2946369..2946974 (+) 606 WP_044367718.1 hypothetical protein -
  O8413_RS13790 (O8413_13790) luxS 2947000..2947518 (+) 519 WP_014205765.1 S-ribosylhomocysteine lyase Regulator
  O8413_RS13795 (O8413_13795) - 2947626..2948900 (-) 1275 WP_004723872.1 HlyC/CorC family transporter -
  O8413_RS13800 (O8413_13800) - 2948991..2949785 (-) 795 WP_004723874.1 inner membrane protein YpjD -
  O8413_RS13805 (O8413_13805) ffh 2949998..2951377 (+) 1380 WP_004723876.1 signal recognition particle protein -
  O8413_RS13810 (O8413_13810) rpsP 2951603..2951851 (+) 249 WP_004723879.1 30S ribosomal protein S16 -
  O8413_RS13815 (O8413_13815) rimM 2951879..2952433 (+) 555 WP_004723882.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18856.59 Da        Isoelectric Point: 4.6766

>NTDB_id=768828 O8413_RS13790 WP_014205765.1 2947000..2947518(+) (luxS) [Vibrio furnissii strain MT14]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLASMQDVLSVESQDQIPELNEYQCGTAAMHSLNEAKAIAETVIAAGIQVNKNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=768828 O8413_RS13790 WP_014205765.1 2947000..2947518(+) (luxS) [Vibrio furnissii strain MT14]
ATGCCATTATTAGACAGTTTTACCGTCGACCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
GCCGAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTCACCATGCCAAACAAAGACATTCTGTCTGAGAAAGGGATTC
ATACGCTGGAGCATCTGTACGCCGGCTTTATGCGTGCGCACCTCAATGGCGCGAACGTGGAAATTATCGACATCTCGCCG
ATGGGATGTCGCACCGGGTTTTACATGAGCCTGATTGGTGCGCCAAGCGAAGAGCAAGTCGCTGCCGCTTGGTTGGCGTC
GATGCAAGACGTATTGAGTGTCGAAAGTCAGGATCAAATTCCTGAGCTGAACGAATACCAGTGCGGCACCGCAGCGATGC
ACTCCCTGAATGAAGCCAAAGCGATTGCTGAAACCGTGATTGCCGCAGGCATTCAGGTCAACAAGAACGATGAACTGGCG
CTGCCCGAATCGATGCTCAATGAGCTGAAAGTGCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2V091

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913