Detailed information NTG0768799

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: O8413_RS02545
• Genome accession: NZ_CP115188
• Coordinates: 552137..553558 (-)
• Length: 473 a.a.
• NCBI ID: WP_283512940.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain MT14
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 547137..558558

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O8413_RS02525 (O8413_02525)	-	547156..549861 (+)	2706	WP_283512939.1	EAL domain-containing protein	-
O8413_RS02530 (O8413_02530)	cdd	549955..550842 (-)	888	WP_014205226.1	cytidine deaminase	-
O8413_RS02535 (O8413_02535)	-	551051..551731 (-)	681	WP_014205225.1	LrgB family protein	-
O8413_RS02540 (O8413_02540)	-	551722..552096 (-)	375	WP_004726196.1	CidA/LrgA family protein	-
O8413_RS02545 (O8413_02545)	sbcB	552137..553558 (-)	1422	WP_283512940.1	exodeoxyribonuclease I	Machinery gene
O8413_RS02550 (O8413_02550)	-	553722..555107 (-)	1386	WP_283512941.1	L-cystine transporter	-
O8413_RS02555 (O8413_02555)	-	555309..555992 (-)	684	WP_283512942.1	NAD(P)H-binding protein	-
O8413_RS02560 (O8413_02560)	-	556392..557003 (+)	612	WP_004726192.1	flavin reductase family protein	-
O8413_RS02565 (O8413_02565)	cobT	557017..558045 (+)	1029	WP_283512943.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54374.74 Da
• Isoelectric Point: 4.8955

>NTDB_id=768799 O8413_RS02545 WP_283512940.1 552137..553558(-) (sbcB) [Vibrio furnissii strain MT14]
MQQQQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALITGIIPQKAMAQGLPEPE
FIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTS
FKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYT
SWIVPIAWHPTNQNAVIVVDLAKDPQPLLDLDAESLHTRLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAAT
IGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQLYEGFFSPADKAAMEIIRSTNPELLGELDITFSDKR
IEPLLFRYRARNFPWTLDDEEQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=768799 O8413_RS02545 WP_283512940.1 552137..553558(-) (sbcB) [Vibrio furnissii strain MT14]
ATGCAGCAACAGCAGCCCACTTATTTTTTCTTTGACTATGAGACGTGGGGCACCAGCCCGGCCAAAGACCGTCCGAGTCA
GTTTGCTGGTGTGCGCACAGACATGGAGTTCAATATCATCGGTGAGCCGTTGGTGATTTACTGCCAATTGCCATCAGATT
ACCTGCCGGCGCCAGAAGCCGCGCTGATTACTGGCATCATTCCGCAAAAAGCGATGGCGCAAGGGCTGCCTGAACCCGAA
TTCATCGCCAAAATTCACGCCGAGTTATCGACACCAAACACCACAAGCCTTGGGTACAACAGCATTCGCTTTGACGATGA
AGTCACCCGTTACACCTGTTATCGCAACTTCCTTGATCCGTATGCTTGGAGCTGGCAAAACGGCAACTCCCGCTGGGATT
TACTGGATGTGATGCGTGCATGTCACGCGTTGCGCCCGGAAGGTGTGGTGTGGCCAGAAAACGACGAAGGGTTTACCAGC
TTCAAACTGGAGCATTTGTCAAAAGCCAACGGCATTGAGCACGAAAATGCACACGATGCGATGGCCGATGTGATTGCGAC
GATTGAACTGGCGAAAAAAGTCAAAGCAGCGCAACCCAAGCTGTTTGAGTATTTCTTCTCGATGCGTCATAAACGCAAGC
TCAATGAGCTGATTGATATTGTCAACATGACGCCGCTGATGCATGTCTCTGGCATGCTGGGCCGTGAATGCCAATACACC
AGTTGGATTGTGCCGATTGCTTGGCACCCGACCAACCAAAACGCGGTCATTGTGGTGGATTTAGCCAAAGATCCACAACC
GCTGCTCGATTTAGATGCGGAATCACTGCACACGCGTTTATACACTCGTCATGACGATTTAGCGCCAGATGAATTACCTG
TGCCCGTCAAGCTGGTTCATCTCAACAAGTGTCCGATTCTAGCCCCGGCGAAAACGCTCACCGCCGAAAATGCCGCCACC
ATCGGCATCGACCGCGAACTGTGCTTGGCCAACTTGGCACGCATTCGTCAGTCTCCCGATATTCGCGAAAAACTGGCGGC
GCTGTTTAGCATTGAGCGCGAATTTGAAGCCTCGAACGATGTGGATACGCAGCTCTATGAGGGGTTCTTCTCCCCTGCAG
ATAAAGCCGCGATGGAAATTATTCGTTCCACGAATCCTGAACTGCTCGGCGAGTTGGATATCACGTTCAGCGACAAACGC
ATTGAACCCCTGCTGTTTCGTTACCGCGCGCGCAACTTCCCGTGGACGCTCGATGACGAGGAGCAACGCCGCTGGGCGAA
CCATTGTCGCGATTACTACGAAACGCATCTACCCGATTACATGCTGAACCTGGAAAATCTGGTGCATGAACATGAAAGTG
ATGAAAAGAAAATCGCGATTCTCAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCATAG

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (10-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (209-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.439	99.577	0.831