Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   O9K61_RS16895 Genome accession   NZ_CP115185
Coordinates   3426942..3428105 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain 26.3     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3421942..3433105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O9K61_RS16865 (O9K61_16865) - 3422206..3422625 (-) 420 WP_007407479.1 TIGR03826 family flagellar region protein -
  O9K61_RS16870 (O9K61_16870) comFC 3422699..3423388 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  O9K61_RS16875 (O9K61_16875) - 3423394..3423678 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  O9K61_RS16880 (O9K61_16880) comFA 3423736..3425121 (-) 1386 WP_007407482.1 DEAD/DEAH box helicase Machinery gene
  O9K61_RS16885 (O9K61_16885) - 3425230..3426078 (-) 849 WP_007407483.1 DegV family protein -
  O9K61_RS16890 (O9K61_16890) degU 3426176..3426865 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  O9K61_RS16895 (O9K61_16895) degS 3426942..3428105 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  O9K61_RS16900 (O9K61_16900) - 3428328..3428975 (+) 648 WP_007407485.1 YigZ family protein -
  O9K61_RS16905 (O9K61_16905) - 3428980..3430200 (+) 1221 WP_032867080.1 LCP family protein -
  O9K61_RS16910 (O9K61_16910) - 3430299..3431375 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  O9K61_RS16915 (O9K61_16915) tuaH 3431508..3432704 (-) 1197 WP_032867083.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=768782 O9K61_RS16895 WP_007407484.1 3426942..3428105(-) (degS) [Bacillus velezensis strain 26.3]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=768782 O9K61_RS16895 WP_007407484.1 3426942..3428105(-) (degS) [Bacillus velezensis strain 26.3]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCTTTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACAGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
ATCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951