Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QQA26_RS16025 Genome accession   NZ_CP126934
Coordinates   3189980..3190657 (+) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli O78:H4 strain APEC E19057     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3184980..3195657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA26_RS15990 (QQA26_15990) gspG 3185460..3185897 (+) 438 WP_001202880.1 type II secretion system major pseudopilin GspG -
  QQA26_RS15995 (QQA26_15995) gspH 3185905..3186414 (+) 510 WP_001076048.1 type II secretion system minor pseudopilin GspH -
  QQA26_RS16000 (QQA26_16000) gspI 3186411..3186788 (+) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  QQA26_RS16005 (QQA26_16005) gspJ 3186781..3187368 (+) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  QQA26_RS16010 (QQA26_16010) gspK 3187361..3188344 (+) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  QQA26_RS16015 (QQA26_16015) gspL 3188359..3189522 (+) 1164 WP_001115230.1 type II secretion system protein GspL -
  QQA26_RS16020 (QQA26_16020) gspM 3189519..3189980 (+) 462 WP_001295161.1 type II secretion system protein GspM -
  QQA26_RS16025 (QQA26_16025) pilD 3189980..3190657 (+) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  QQA26_RS16030 (QQA26_16030) bfr 3190686..3191162 (-) 477 WP_000675504.1 bacterioferritin -
  QQA26_RS16035 (QQA26_16035) bfd 3191234..3191428 (-) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  QQA26_RS16040 (QQA26_16040) chiA 3191597..3194290 (-) 2694 WP_000773151.1 bifunctional chitinase/lysozyme -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=768770 QQA26_RS16025 WP_000178161.1 3189980..3190657(+) (pilD) [Escherichia coli O78:H4 strain APEC E19057]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=768770 QQA26_RS16025 WP_000178161.1 3189980..3190657(+) (pilD) [Escherichia coli O78:H4 strain APEC E19057]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378