Detailed information NTG0076875

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LPH28_RS21125
• Genome accession: NZ_AP025209
• Coordinates: 4364197..4365222 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 2017.06.04CC
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4359197..4370222

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPH28_RS21105 (VEGS18_A40930)	metJ	4360258..4360575 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LPH28_RS21110 (VEGS18_A40940)	yiiX	4360759..4361367 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LPH28_RS21115 (VEGS18_A40950)	rpmE	4361428..4361640 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LPH28_RS21120 (VEGS18_A40960)	priA	4361843..4364041 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
LPH28_RS21125 (VEGS18_A40970)	cytR	4364197..4365222 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LPH28_RS21130 (VEGS18_A40980)	ftsN	4365314..4366273 (+)	960	WP_000068828.1	cell division protein FtsN	-
LPH28_RS21135 (VEGS18_A40990)	hslV	4366366..4366896 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LPH28_RS21140 (VEGS18_A41000)	hslU	4366906..4368237 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LPH28_RS21145 (VEGS18_A41010)	menA	4368304..4369230 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LPH28_RS21150 (VEGS18_A41020)	rraA	4369323..4369808 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LPH28_RS21155 (VEGS18_A41030)	zapB	4369893..4370138 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=76875 LPH28_RS21125 WP_000644904.1 4364197..4365222(+) (cytR) [Escherichia coli strain 2017.06.04CC]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=76875 LPH28_RS21125 WP_000644904.1 4364197..4365222(+) (cytR) [Escherichia coli strain 2017.06.04CC]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628