Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PCQ86_RS01440 Genome accession   NZ_CP115182
Coordinates   302193..303575 (+) Length   460 a.a.
NCBI ID   WP_011803649.1    Uniprot ID   A0AAX1WWC5
Organism   Diaphorobacter sp. ED-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 297193..308575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCQ86_RS01415 alr 297846..298943 (+) 1098 WP_103736852.1 alanine racemase -
  PCQ86_RS01420 - 298952..299785 (+) 834 WP_270174699.1 hypothetical protein -
  PCQ86_RS01425 - 300023..301042 (+) 1020 WP_270174700.1 cytochrome-c peroxidase -
  PCQ86_RS01430 - 301138..301752 (-) 615 WP_270174701.1 glutathione S-transferase family protein -
  PCQ86_RS01435 - 301901..302083 (-) 183 WP_012655300.1 hypothetical protein -
  PCQ86_RS01440 radA 302193..303575 (+) 1383 WP_011803649.1 DNA repair protein RadA Machinery gene
  PCQ86_RS01445 - 303645..304085 (+) 441 WP_270174702.1 glycerate kinase -
  PCQ86_RS01450 - 304132..305070 (+) 939 WP_047350207.1 branched-chain amino acid transaminase -
  PCQ86_RS01455 - 305075..305281 (+) 207 WP_123675308.1 zinc-finger domain-containing protein -
  PCQ86_RS01460 - 305390..306697 (+) 1308 WP_270174703.1 O-antigen ligase family protein -
  PCQ86_RS01465 - 306760..307863 (+) 1104 WP_270174704.1 glycosyltransferase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47828.30 Da        Isoelectric Point: 6.8876

>NTDB_id=768672 PCQ86_RS01440 WP_011803649.1 302193..303575(+) (radA) [Diaphorobacter sp. ED-3]
MAKEKTIFSCTECGGTSPRWLGKCPSCGAWNTLIESVPDAGPGKNRLSGAGQYAGLAQAQAVMPLAAIEATEVARTASGI
EELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQAMDALQRAGLPTLYVTGEESGAQVALRSRRLGLDASQVNVLAEIQLE
KILATVEATQPAVCVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRMAKATGIAVILVGHVTKEGALAGPRVLEHMVDTV
LYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVANPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDG
GGPSPRRLSVGLERDRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVMLAITSSLRGKALPKGFIAFGEVG
LAGEVRPAPRGQERLKEAAKLGFTVAVVPKANAPKKPIAGLEIHAVERVDEAMTAVRGLD

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=768672 PCQ86_RS01440 WP_011803649.1 302193..303575(+) (radA) [Diaphorobacter sp. ED-3]
ATGGCCAAAGAAAAAACCATCTTCTCCTGCACCGAATGCGGTGGCACCAGTCCGCGCTGGCTGGGCAAATGCCCCTCCTG
CGGTGCGTGGAACACCCTGATCGAATCCGTGCCCGACGCTGGACCGGGCAAGAACCGCCTGAGCGGGGCCGGCCAGTACG
CGGGCCTGGCCCAGGCGCAGGCGGTGATGCCGCTGGCCGCCATCGAGGCGACCGAGGTGGCGCGCACGGCGAGCGGCATC
GAGGAACTGGACCGCGTGCTGGGCGGTGGCGTGGTCGAGGGCGGGGTGGTGCTCATCGGCGGCGACCCGGGCATCGGCAA
GTCCACGCTGCTCTTGCAGGCGATGGACGCGCTGCAGCGCGCGGGCCTGCCCACGCTGTACGTGACGGGCGAGGAGAGCG
GCGCCCAGGTGGCGTTGCGTTCGCGCCGGCTGGGGCTGGATGCGAGCCAGGTGAACGTGTTGGCCGAGATCCAACTCGAA
AAAATCCTCGCCACCGTGGAGGCCACGCAGCCCGCGGTGTGCGTCATCGACTCCATCCAGACCGTCTATTCCGACCAGCT
CACCAGCGCCCCGGGCTCGGTGGCCCAGGTGCGCGAGTGCGCGGCCCATCTCACGCGCATGGCCAAGGCCACGGGCATCG
CCGTCATCCTGGTGGGCCACGTGACCAAGGAGGGTGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTG
CTGTACTTCGAGGGCGACACGCACAGCAGCTTCCGTCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCCGTGAACGAGAT
CGGCGTGTTCGCCATGACCGAGAAGGGCCTCAAGGGCGTGGCGAACCCGAGTGCCATTTTTTTGAGCCAGCACAGCGAGC
CGGTGCCCGGCAGCTGCGTGCTGGTCACGCTGGAGGGCACACGGCCCATGCTGGTGGAGATCCAGGCGCTGGTGGACGGC
GGGGGGCCCAGCCCGCGGCGCCTGTCGGTGGGGCTGGAGCGCGACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCA
CGCGGGCGTGGCCTGCGCCGACCAGGACGTGTTCGTCAACGCCGTAGGGGGCGTGCGCATCAGCGAACCCGCGGCCGACC
TGGCCGTGATGCTGGCCATCACCAGCAGCCTGCGCGGCAAGGCGTTGCCCAAGGGCTTCATCGCGTTTGGCGAGGTGGGC
CTGGCTGGCGAGGTGCGCCCCGCGCCGCGTGGCCAGGAGCGCCTGAAGGAAGCCGCCAAACTGGGCTTCACGGTGGCCGT
GGTGCCCAAAGCCAATGCGCCCAAGAAGCCGATCGCCGGGCTGGAGATCCACGCAGTGGAGCGCGTGGACGAGGCCATGA
CTGCCGTGCGCGGGCTGGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-225)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(363-454)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

99.13

0.485
  radA Streptococcus mitis NCTC 12261

47.046

99.348

0.467
  radA Streptococcus pneumoniae D39

48.848

94.348

0.461
  radA Streptococcus pneumoniae TIGR4

48.848

94.348

0.461
  radA Streptococcus mitis SK321

48.848

94.348

0.461
  radA Streptococcus pneumoniae R6

48.848

94.348

0.461
  radA Streptococcus pneumoniae Rx1

48.848

94.348

0.461