Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ORQ91_RS19165 Genome accession   NZ_CP115172
Coordinates   3774476..3775588 (-) Length   370 a.a.
NCBI ID   WP_270126432.1    Uniprot ID   -
Organism   Bacillus safensis strain BS-10L     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3769476..3780588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORQ91_RS19150 (ORQ91_03829) gyrA 3769502..3772006 (-) 2505 WP_024424078.1 DNA gyrase subunit A -
  ORQ91_RS19155 (ORQ91_03830) gyrB 3772239..3774155 (-) 1917 WP_024424077.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ORQ91_RS19160 (ORQ91_03831) remB 3774213..3774458 (-) 246 WP_024424076.1 extracellular matrix regulator RemB -
  ORQ91_RS19165 (ORQ91_03832) recF 3774476..3775588 (-) 1113 WP_270126432.1 DNA replication/repair protein RecF Machinery gene
  ORQ91_RS19170 (ORQ91_03833) yaaA 3775605..3775820 (-) 216 WP_008360916.1 S4 domain-containing protein YaaA -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42486.58 Da        Isoelectric Point: 7.3662

>NTDB_id=768583 ORQ91_RS19165 WP_270126432.1 3774476..3775588(-) (recF) [Bacillus safensis strain BS-10L]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLLGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=768583 ORQ91_RS19165 WP_270126432.1 3774476..3775588(-) (recF) [Bacillus safensis strain BS-10L]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACTGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTTTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTGGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTTACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACCCTGTTGGGACCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGGACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCCATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832