Detailed information NTG0768582

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QQA27_RS05490
• Genome accession: NZ_CP126928
• Coordinates: 1139030..1140022 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O2:K1:H4 strain APEC E12053
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1134030..1145022

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQA27_RS05460 (QQA27_05460)	ispD	1134091..1134801 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QQA27_RS05465 (QQA27_05465)	ispF	1134801..1135280 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QQA27_RS05470 (QQA27_05470)	truD	1135277..1136326 (+)	1050	WP_289245868.1	tRNA pseudouridine(13) synthase TruD	-
QQA27_RS05475 (QQA27_05475)	surE	1136307..1137068 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QQA27_RS05480 (QQA27_05480)	pcm	1137062..1137688 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
QQA27_RS05485 (QQA27_05485)	nlpD	1137873..1138967 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QQA27_RS05490 (QQA27_05490)	rpoS	1139030..1140022 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QQA27_RS05495 (QQA27_05495)	-	1140200..1140751 (-)	552	WP_001179442.1	flavodoxin family protein	-
QQA27_RS05500 (QQA27_05500)	-	1140976..1142019 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
QQA27_RS05505 (QQA27_05505)	ygbN	1142162..1143526 (-)	1365	WP_000104443.1	GntP family transporter	-
QQA27_RS05510 (QQA27_05510)	ygbM	1143615..1144391 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=768582 QQA27_RS05490 WP_000081550.1 1139030..1140022(+) (rpoS) [Escherichia coli O2:K1:H4 strain APEC E12053]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=768582 QQA27_RS05490 WP_000081550.1 1139030..1140022(+) (rpoS) [Escherichia coli O2:K1:H4 strain APEC E12053]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715