Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   ORQ91_RS12430 Genome accession   NZ_CP115172
Coordinates   2430335..2432437 (+) Length   700 a.a.
NCBI ID   WP_270125201.1    Uniprot ID   -
Organism   Bacillus safensis strain BS-10L     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2425335..2437437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORQ91_RS12400 (ORQ91_02479) - 2425632..2425994 (+) 363 WP_034623357.1 winged helix-turn-helix transcriptional regulator -
  ORQ91_RS12405 (ORQ91_02480) queF 2426438..2426935 (-) 498 WP_024426839.1 preQ(1) synthase -
  ORQ91_RS12410 (ORQ91_02481) queE 2426951..2427682 (-) 732 WP_056766298.1 7-carboxy-7-deazaguanine synthase QueE -
  ORQ91_RS12415 (ORQ91_02482) queD 2427675..2428115 (-) 441 WP_024424684.1 6-carboxytetrahydropterin synthase QueD -
  ORQ91_RS12420 (ORQ91_02483) queC 2428116..2428772 (-) 657 WP_024424683.1 7-cyano-7-deazaguanine synthase QueC -
  ORQ91_RS12425 (ORQ91_02484) - 2429047..2430090 (-) 1044 WP_073204958.1 hypothetical protein -
  ORQ91_RS12430 (ORQ91_02485) clpC 2430335..2432437 (+) 2103 WP_270125201.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  ORQ91_RS12435 (ORQ91_02487) motA 2432816..2433610 (+) 795 WP_024424680.1 flagellar motor stator protein MotA -
  ORQ91_RS12440 (ORQ91_02488) motB 2433603..2434373 (+) 771 WP_024424679.1 flagellar motor protein MotB -
  ORQ91_RS12445 (ORQ91_02489) - 2434566..2435021 (-) 456 WP_044331884.1 MarR family winged helix-turn-helix transcriptional regulator -
  ORQ91_RS12450 (ORQ91_02490) - 2435226..2436731 (+) 1506 WP_044331882.1 ATP-binding protein -
  ORQ91_RS12455 (ORQ91_02491) - 2436778..2437020 (-) 243 WP_024424676.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 78024.63 Da        Isoelectric Point: 4.9961

>NTDB_id=768562 ORQ91_RS12430 WP_270125201.1 2430335..2432437(+) (clpC) [Bacillus safensis strain BS-10L]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQAAGHAPNMEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLTEIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTEKEHIITAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGTADKTVKVGFQSDQEEAFEEQSLIDSLSSYFKPEFLNRFDSIIQFDSLDREDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=768562 ORQ91_RS12430 WP_270125201.1 2430335..2432437(+) (clpC) [Bacillus safensis strain BS-10L]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCTCAGCTCTTTGGAGGAAGTTCAT
TCTTCTCTCAGGCAGCAGGTCATGCCCCAAACATGGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAGCTCGGCCGTAAC
TTAACAGATGGAGCAAATGCTGGTTTAATTGATCCAGTCATTGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTTATTGGTGAACCAGGCGTTGGGAAAACAGCGATCGCAGAAGGACTCGCGC
TCAAAATTGCGAGCGGCGATGTGCCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCACTTGTCGCA
AACACAGGGATACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAACTGCAAAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCACCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGTGAACTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGGCGCTTCCAGCCCGTCATCGTAGATGAGCCAACACAAGATGAAGCGATCGACATCTTAAAAGGCATTCAAGATAA
ATACGAGGCTTATCATGGTGTCACCTATTCAGATGAAGCAATCAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGTCATTTACCGGATAAAGCCATTGATTTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAGCTGACAAATCGATTAACGGAAATTGCCGCAGAAAAACAAGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAACTGAAAAAGAGCATATCATTACAG
CAGAGGACATTCAGGCCATTGTGGAACAAAAAACAGGCATTCCTGTCGGGAAACTCCAAGCAGACGAACAAACCAAAATG
AAAGAGATTGACGTCCGTCTAAAAGCACGAGTGATTGGGCAGGAGCATGCGGTTGATAAAGTGGCCAAAGCCGTGAAAAG
AAGCAGAGCTGGATTAAAATCGAAACATAGACCAACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACGTTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCTGGCCAGCTGACTGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCAGATGTACAGCACATGTTCCTGCAAA
TCATGGAAGACGGCCGCTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCACCGCAGATAAAACAGTCAAAGTGGGCTTCCAATCTGATCAGGAAGAAGCGTTTGAGGAACAATCACTCATTGA
TTCACTGAGCAGCTACTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAATTTGATTCACTAGACAGAGAGG
ATTTAGTGAAGATTGTTGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAGAATTTAACAGTTCATGTCACA
AATGAAGCAAAAGAAAAGATTGCAGAGCTTGGATATCATCCTGCATTTGGTGCTCGTCCACTTCGAAGAACCATTCAAGA
GCACGTTGAAGACCAAATGACGGAGATCCTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(253-353)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-687)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

57.317

100

0.604
  clpE Streptococcus mutans UA159

56.739

100

0.601
  clpE Streptococcus pneumoniae Rx1

55.939

100

0.579
  clpE Streptococcus pneumoniae D39

55.939

100

0.579
  clpE Streptococcus pneumoniae R6

55.939

100

0.579
  clpE Streptococcus pneumoniae TIGR4

55.801

100

0.577
  clpC Bacillus subtilis subsp. subtilis str. 168

53.731

95.714

0.514
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.933

93.143

0.437
  clpC Streptococcus thermophilus LMD-9

46.213

92.429

0.427
  clpC Streptococcus thermophilus LMG 18311

46.059

92.429

0.426
  clpC Streptococcus mutans UA159

44.172

93.143

0.411
  clpC Streptococcus pneumoniae TIGR4

44.745

89.714

0.401
  clpC Streptococcus pneumoniae Rx1

44.944

89

0.4
  clpC Streptococcus pneumoniae D39

44.944

89

0.4