Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ORQ91_RS08825 Genome accession   NZ_CP115172
Coordinates   1717299..1717934 (-) Length   211 a.a.
NCBI ID   WP_044333249.1    Uniprot ID   -
Organism   Bacillus safensis strain BS-10L     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1712299..1722934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORQ91_RS08805 (ORQ91_01766) - 1712639..1713343 (+) 705 WP_024422777.1 DnaD domain-containing protein -
  ORQ91_RS08810 (ORQ91_01767) nth 1713361..1714023 (+) 663 WP_122631032.1 endonuclease III -
  ORQ91_RS08815 (ORQ91_01768) - 1714020..1714529 (+) 510 WP_122631031.1 YpoC family protein -
  ORQ91_RS08820 (ORQ91_01769) - 1714565..1717279 (-) 2715 WP_073206060.1 PBP1A family penicillin-binding protein -
  ORQ91_RS08825 (ORQ91_01770) recU 1717299..1717934 (-) 636 WP_044333249.1 Holliday junction resolvase RecU Machinery gene
  ORQ91_RS08830 (ORQ91_01771) - 1717981..1718937 (+) 957 WP_270127972.1 DUF2515 domain-containing protein -
  ORQ91_RS08835 (ORQ91_01772) sspM 1718964..1719068 (-) 105 WP_024422772.1 acid-soluble spore protein SspM -
  ORQ91_RS08840 (ORQ91_01773) - 1719266..1719499 (+) 234 WP_224426684.1 DUF5446 family protein -
  ORQ91_RS08845 (ORQ91_01774) - 1719549..1719929 (+) 381 WP_270127975.1 YppE family protein -
  ORQ91_RS08850 (ORQ91_01775) - 1720038..1720466 (+) 429 WP_234107196.1 YppG family protein -
  ORQ91_RS08855 (ORQ91_01776) - 1720486..1720905 (-) 420 WP_024422768.1 Hsp20/alpha crystallin family protein -
  ORQ91_RS08860 (ORQ91_01777) - 1721076..1721582 (+) 507 WP_024422767.1 PTS sugar transporter subunit IIA -
  ORQ91_RS08865 (ORQ91_01778) - 1721636..1722754 (-) 1119 WP_234107195.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24301.64 Da        Isoelectric Point: 9.7504

>NTDB_id=768553 ORQ91_RS08825 WP_044333249.1 1717299..1717934(-) (recU) [Bacillus safensis strain BS-10L]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESNQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=768553 ORQ91_RS08825 WP_044333249.1 1717299..1717934(-) (recU) [Bacillus safensis strain BS-10L]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGGATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTGTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGCATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCGGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAG
AAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAATCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.267

95.735

0.701