Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   M8445_RS07510 Genome accession   NZ_CP115165
Coordinates   1541476..1542027 (-) Length   183 a.a.
NCBI ID   WP_273990775.1    Uniprot ID   -
Organism   Deinococcus aquaticus strain PB-314     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1536476..1547027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8445_RS07480 (M8445_07480) - 1536667..1537233 (+) 567 WP_273990765.1 DinB family protein -
  M8445_RS07485 (M8445_07485) rocF 1537311..1538210 (-) 900 WP_273990766.1 arginase -
  M8445_RS07490 (M8445_07490) - 1538364..1538888 (-) 525 WP_273990768.1 GNAT family N-acetyltransferase -
  M8445_RS07495 (M8445_07495) - 1539043..1539693 (+) 651 WP_273990769.1 metallophosphoesterase family protein -
  M8445_RS07500 (M8445_07500) - 1540290..1540871 (+) 582 WP_273990771.1 hypothetical protein -
  M8445_RS07505 (M8445_07505) - 1540904..1541395 (+) 492 WP_273990773.1 hypothetical protein -
  M8445_RS07510 (M8445_07510) ddrB 1541476..1542027 (-) 552 WP_273990775.1 single-stranded DNA-binding protein Machinery gene
  M8445_RS07515 (M8445_07515) - 1542246..1543145 (-) 900 WP_273990776.1 acyl-CoA acyltransferase -
  M8445_RS07520 (M8445_07520) menC 1543145..1544254 (-) 1110 WP_273990777.1 o-succinylbenzoate synthase -
  M8445_RS07530 (M8445_07530) - 1546557..1546811 (+) 255 WP_273990779.1 acyl-CoA-binding protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20391.62 Da        Isoelectric Point: 6.8862

>NTDB_id=768516 M8445_RS07510 WP_273990775.1 1541476..1542027(-) (ddrB) [Deinococcus aquaticus strain PB-314]
MLHIEFTTDLGARVTVDVESPAQLLDTQRQYGRLGWTSGDVPSGGYQFPLENEADFDWTLIGARRWTSPDGEELVIHRGH
AYRRRELEAVDSRKMKLPAAVKYSRGAKSTDPEHVREKSDGEFEYVTLVIFRGGKRQDRYATPRQNAQGAQPTQASRPAP
QAATRPAPRPAPVAASADDETPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=768516 M8445_RS07510 WP_273990775.1 1541476..1542027(-) (ddrB) [Deinococcus aquaticus strain PB-314]
ATGCTGCACATCGAATTCACCACTGACCTGGGCGCCCGCGTCACCGTCGACGTTGAAAGCCCCGCCCAACTCCTGGATAC
CCAGCGCCAGTACGGCCGACTTGGCTGGACCAGCGGCGACGTTCCCAGCGGCGGCTACCAGTTCCCCCTGGAAAACGAGG
CCGACTTCGACTGGACCCTGATCGGCGCGCGCCGGTGGACCAGCCCCGACGGCGAGGAGCTCGTCATTCACCGTGGCCAC
GCCTACCGCCGCCGTGAACTGGAAGCCGTGGACAGCCGCAAGATGAAGCTCCCGGCCGCCGTGAAGTACTCACGCGGCGC
GAAAAGCACGGACCCCGAACACGTCCGCGAGAAATCCGACGGTGAATTCGAGTACGTGACACTGGTCATCTTCCGGGGCG
GCAAACGCCAGGACCGATACGCCACGCCCCGCCAGAACGCCCAGGGCGCGCAGCCCACCCAGGCCAGCCGCCCCGCCCCC
CAGGCGGCCACGCGGCCCGCGCCCCGCCCCGCCCCGGTTGCCGCCAGCGCCGACGACGAAACGCCTTTCTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

75.309

88.525

0.667