Detailed information NTG0768505

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: M8445_RS01575
• Genome accession: NZ_CP115165
• Coordinates: 323463..324683 (+)
• Length: 406 a.a.
• NCBI ID: WP_273989193.1
• Uniprot ID: -
• Organism: Deinococcus aquaticus strain PB-314
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 318463..329683

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M8445_RS01545 (M8445_01545)	-	318613..319542 (+)	930	WP_273989185.1	branched-chain amino acid ABC transporter permease	-
M8445_RS01550 (M8445_01550)	-	319539..320318 (+)	780	WP_273989186.1	ABC transporter ATP-binding protein	-
M8445_RS01555 (M8445_01555)	-	320460..321167 (+)	708	WP_273989188.1	ABC transporter ATP-binding protein	-
M8445_RS01560 (M8445_01560)	-	321223..321984 (-)	762	WP_273989190.1	DUF4388 domain-containing protein	-
M8445_RS01565 (M8445_01565)	scpB	322177..322731 (-)	555	WP_273989191.1	SMC-Scp complex subunit ScpB	-
M8445_RS01570 (M8445_01570)	-	322728..323357 (-)	630	WP_273989192.1	L-threonylcarbamoyladenylate synthase	-
M8445_RS01575 (M8445_01575)	pilC	323463..324683 (+)	1221	WP_273989193.1	type II secretion system F family protein	Machinery gene
M8445_RS01580 (M8445_01580)	-	324742..325956 (-)	1215	WP_273989194.1	S8 family serine peptidase	-
M8445_RS01585 (M8445_01585)	-	326256..326495 (-)	240	WP_291431046.1	HNH endonuclease	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44527.36 Da
• Isoelectric Point: 9.5150

>NTDB_id=768505 M8445_RS01575 WP_273989193.1 323463..324683(+) (pilC) [Deinococcus aquaticus strain PB-314]
MPVFEYRVRDRSGKVLKSQMEAETANQVRDALRAKNLMIVEIKAPKTGMNADISIPFLDNRPPSLKQVAIFSKQLATLIN
AGVPLVQSLAILQKQIEHKGFQKVVKNMRTDVESGTPLSEAIVKYPRIFNRLYVNLVRAGETSGTLDSVLERIADFQEKE
LALRGKIKSALTYPVVVLVFAILITYFLLTTIVPQFAGILAQMNAPLPFITRMLVAISDFLQNSMLFLIAANIVIVFAYR
AYYKTTKGRFVIDDIKLRLPVFGNLTQKSAIASFARTFGLLISSGVNIIESLEITKGTAGNAQVEESIENAKNVVMVGEQ
MSSSLATSKVFPPMVVSMISIGEETGSLDNMLGKVGDFYDREVDEAVDSMTAAIEPLMIVFLGGIVGTIVAGMFLPMFAI
IGQLSQ

Nucleotide

• Length: 1221 bp

>NTDB_id=768505 M8445_RS01575 WP_273989193.1 323463..324683(+) (pilC) [Deinococcus aquaticus strain PB-314]
ATGCCCGTCTTCGAATACCGAGTGCGTGACCGCTCCGGAAAGGTGCTGAAATCCCAGATGGAAGCCGAGACGGCCAACCA
GGTCCGGGACGCCCTGCGCGCCAAGAACCTGATGATCGTCGAGATCAAGGCCCCCAAAACGGGCATGAACGCCGATATCA
GCATTCCCTTCCTGGACAACAGACCGCCAAGCCTCAAGCAGGTGGCCATTTTCAGTAAACAACTTGCCACGCTGATCAAC
GCCGGGGTTCCCTTGGTGCAGTCCTTGGCGATCCTGCAAAAACAGATCGAGCACAAGGGATTCCAGAAAGTCGTGAAGAA
CATGCGCACCGATGTGGAATCCGGCACGCCACTGAGTGAAGCCATCGTCAAGTACCCCAGGATCTTCAACCGACTGTACG
TGAACCTCGTCCGAGCCGGCGAGACCAGCGGCACGCTCGACTCGGTGCTGGAACGCATTGCAGACTTCCAAGAAAAGGAA
CTGGCGCTACGCGGCAAGATCAAGAGCGCACTGACCTACCCGGTCGTGGTACTTGTCTTCGCCATTCTAATCACTTACTT
CCTGCTGACCACTATCGTGCCGCAGTTCGCTGGAATCCTGGCTCAGATGAACGCACCCCTGCCTTTCATCACGCGCATGC
TGGTTGCTATTTCCGATTTTTTGCAAAATTCCATGCTGTTTCTCATAGCAGCCAACATCGTTATCGTTTTTGCCTATCGC
GCCTATTATAAGACAACTAAAGGCCGCTTCGTTATTGATGATATCAAGTTGCGCCTACCGGTTTTCGGAAACCTAACGCA
GAAAAGTGCCATTGCCTCATTTGCTCGCACTTTTGGTCTACTTATCAGCAGTGGCGTTAATATAATTGAGAGTCTTGAAA
TAACTAAGGGCACAGCTGGTAATGCGCAAGTCGAGGAAAGCATCGAGAACGCCAAGAACGTCGTGATGGTCGGTGAGCAG
ATGAGTTCCAGTCTCGCGACCAGCAAGGTCTTCCCGCCCATGGTGGTCAGCATGATCTCCATCGGCGAGGAAACCGGGTC
GCTGGACAACATGCTCGGTAAGGTCGGTGATTTCTACGACCGCGAAGTGGATGAGGCGGTGGACAGCATGACGGCCGCCA
TCGAGCCGCTGATGATCGTGTTCCTGGGCGGCATCGTGGGCACCATCGTGGCCGGGATGTTCCTCCCGATGTTCGCCATC
ATCGGCCAGCTCAGTCAGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	58.374	100	0.584