Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   M8445_RS01310 Genome accession   NZ_CP115165
Coordinates   265347..267572 (+) Length   741 a.a.
NCBI ID   WP_273990959.1    Uniprot ID   -
Organism   Deinococcus aquaticus strain PB-314     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 260347..272572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8445_RS01280 (M8445_01280) - 260496..261752 (+) 1257 WP_273989124.1 C39 family peptidase -
  M8445_RS01285 (M8445_01285) yidC 261819..263453 (-) 1635 WP_273989126.1 membrane protein insertase YidC -
  M8445_RS01290 (M8445_01290) yidD 263450..263731 (-) 282 WP_273989127.1 membrane protein insertion efficiency factor YidD -
  M8445_RS01295 (M8445_01295) rnpA 263923..264294 (-) 372 Protein_257 ribonuclease P protein component -
  M8445_RS01300 (M8445_01300) rpmH 264386..264529 (-) 144 WP_273989128.1 50S ribosomal protein L34 -
  M8445_RS01305 (M8445_01305) comEA 264731..265126 (+) 396 WP_273989130.1 ComEA family DNA-binding protein Machinery gene
  M8445_RS01310 (M8445_01310) comEC 265347..267572 (+) 2226 WP_273990959.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M8445_RS01315 (M8445_01315) - 267634..269283 (-) 1650 WP_273989131.1 MDR family MFS transporter -
  M8445_RS01320 (M8445_01320) - 269280..269780 (-) 501 WP_273989133.1 MarR family winged helix-turn-helix transcriptional regulator -
  M8445_RS01325 (M8445_01325) - 269866..270339 (-) 474 WP_273989134.1 NUDIX domain-containing protein -
  M8445_RS01330 (M8445_01330) - 270336..270782 (-) 447 WP_273989135.1 NUDIX domain-containing protein -
  M8445_RS01335 (M8445_01335) - 271025..272059 (+) 1035 WP_273989136.1 thiamine ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 76574.49 Da        Isoelectric Point: 11.1864

>NTDB_id=768504 M8445_RS01310 WP_273990959.1 265347..267572(+) (comEC) [Deinococcus aquaticus strain PB-314]
MGAAPVGVAARTAWSVPGALGVIAGILLALGVTLGFGGNGALSLAGLGALLGALTWREPRRALLLGLAVAGVGAGFLSAR
TVLARPDPMTPWLGAQVTLRGEWDGQFLTLAEPRARVVVAPKPTQGPGALVVAGRLVPPEGRRTPGGFDQAGWLRSQGGL
FVPAPGAVLVAAQVRAHEPERGLRGWFRRGLSAGLDERRAALMQAIELGDRSDITREEFAAGYSVRDAFTRAGLAHLMAL
SGQNVALITGVLVWLMIRAGASPAWRFGVPAALLLPYLLMLVQPSPSITRAVIMGGVVLVALAVGRGRPDPLGLIALAAL
LCLLLFPLWLLDLGFGLSFLAVLALTGSARLAGRLPARWPHTLRLAVAATVLAELGTLPVIAGTFGQVPLVGLPANLVAG
VIMAALVPLGFLAGLLGPVAAPLNLINGPLASALLLVAQTFGQAPVLTWGVIGPGGTLAFVTAAGAGWLWLMGRVPGRAV
LGAVLAGTLLTALPGWVRPAQDIVFLDVGQGDCTLLRLPGLTVLIDAGGSVGSDYDVGGRTVVPALRALGVRKLDVVIAT
HADTDHIEGVSGVLRALPVGELWIGQRKTDDPVLTAVLNEAQVRGVPVREVRRGDRVQAGRAALTVLWPPGNVWSTEDND
NSVAVRLDVGGWHAAFLGDLPAPAEAALNTGPLNLLKAAHHGSRYSTGEALLAQARPTDAVISVGRNTYGHPHPDVLGRL
AASNTRTWRTDQNGTITWPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=768504 M8445_RS01310 WP_273990959.1 265347..267572(+) (comEC) [Deinococcus aquaticus strain PB-314]
ATGGGGGCCGCGCCGGTTGGAGTGGCGGCGCGCACGGCGTGGTCGGTTCCGGGGGCGCTGGGGGTGATCGCCGGCATCCT
GCTGGCGCTGGGAGTCACGCTGGGCTTCGGCGGGAACGGCGCGCTGTCCCTGGCGGGGCTGGGCGCGCTGCTGGGGGCAC
TGACGTGGCGTGAACCCCGGCGGGCGCTGCTGCTGGGGCTGGCCGTGGCGGGTGTGGGGGCGGGGTTCCTGTCGGCCCGC
ACGGTCCTGGCCCGCCCGGACCCCATGACGCCGTGGCTGGGCGCGCAGGTGACGCTGCGGGGCGAGTGGGACGGACAGTT
CCTGACGCTGGCCGAGCCGCGCGCGCGGGTGGTGGTCGCGCCGAAACCCACGCAGGGACCGGGGGCGCTGGTGGTGGCGG
GCCGGCTGGTCCCGCCGGAAGGACGGCGCACGCCCGGCGGCTTCGATCAGGCAGGGTGGCTGCGCTCGCAGGGCGGGCTG
TTCGTACCGGCCCCCGGCGCGGTGCTGGTCGCGGCGCAGGTCCGGGCGCACGAGCCGGAGCGTGGGCTGCGCGGCTGGTT
CCGGCGGGGCCTGAGTGCCGGGCTGGACGAACGGCGCGCGGCGCTGATGCAGGCCATCGAACTCGGGGACCGCAGCGACA
TCACCCGTGAAGAGTTCGCCGCAGGGTACTCGGTGCGGGACGCCTTCACCCGCGCCGGACTGGCGCACCTGATGGCGCTG
TCCGGGCAGAACGTCGCGCTGATCACGGGCGTGCTGGTGTGGCTAATGATCCGCGCCGGGGCCTCGCCCGCCTGGCGGTT
CGGGGTCCCGGCCGCGCTGCTGCTGCCTTACCTGCTGATGCTGGTGCAGCCCTCGCCGAGTATCACGCGGGCGGTGATCA
TGGGCGGCGTGGTGCTGGTCGCGCTGGCAGTGGGGCGCGGGCGGCCCGACCCGCTGGGCCTGATCGCGCTGGCGGCGCTG
CTGTGCCTGCTGCTGTTCCCACTGTGGCTGCTGGACCTGGGTTTCGGGCTGTCGTTCCTGGCGGTGCTGGCCCTGACCGG
CTCGGCGCGGCTGGCCGGGCGGCTGCCCGCGCGCTGGCCACACACCCTGCGGCTGGCGGTCGCGGCGACCGTGCTGGCGG
AACTGGGCACCCTGCCGGTCATCGCGGGGACGTTCGGGCAGGTGCCGCTGGTGGGCCTGCCCGCCAACCTCGTGGCGGGC
GTGATCATGGCGGCGCTGGTGCCGCTGGGGTTCCTGGCGGGACTGCTGGGACCAGTGGCCGCGCCGCTGAACCTGATCAA
CGGGCCGCTGGCGTCGGCGCTGCTGCTGGTCGCGCAGACCTTCGGGCAGGCACCGGTCCTGACCTGGGGCGTGATCGGGC
CGGGCGGGACGCTGGCCTTCGTCACGGCAGCCGGGGCGGGCTGGCTGTGGCTGATGGGGCGCGTGCCGGGCCGGGCAGTG
CTGGGGGCGGTGCTGGCCGGCACGCTGCTCACGGCGCTGCCCGGCTGGGTGCGGCCCGCGCAGGACATCGTGTTCCTGGA
CGTGGGCCAGGGCGACTGCACGCTGCTGCGGCTGCCGGGCCTGACCGTTCTGATCGACGCGGGCGGCTCGGTCGGCAGTG
ACTACGACGTGGGCGGGCGCACGGTCGTCCCGGCCCTGCGGGCGCTGGGCGTGCGGAAACTGGACGTGGTGATCGCCACG
CACGCCGACACGGACCACATCGAGGGAGTCAGCGGCGTGCTGCGGGCCCTACCGGTCGGGGAACTGTGGATCGGGCAACG
AAAGACGGACGATCCGGTCCTGACGGCCGTGTTGAACGAGGCGCAGGTGCGCGGCGTCCCGGTGCGCGAGGTGCGGCGCG
GCGACCGCGTGCAGGCGGGCCGCGCGGCCCTGACGGTCCTGTGGCCCCCCGGCAACGTGTGGAGTACCGAGGACAACGAC
AACAGCGTCGCCGTTCGACTGGACGTGGGTGGCTGGCACGCCGCGTTCCTGGGCGACCTGCCCGCCCCCGCCGAGGCCGC
GCTGAACACCGGCCCGCTGAACCTGCTGAAAGCCGCGCACCACGGCAGCCGTTACAGTACCGGCGAGGCCCTACTGGCGC
AGGCGCGCCCCACCGACGCCGTGATCAGCGTGGGCCGCAACACCTACGGCCACCCCCACCCGGACGTGCTGGGCAGGCTG
GCCGCATCGAACACCCGGACGTGGCGCACCGATCAGAACGGCACGATCACCTGGCCGCTGCCATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(224-472)

Metallo-beta-lactamase superfamily (Lactamase_B)

(507-705)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

69.67

89.879

0.626