Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   M8445_RS01305 Genome accession   NZ_CP115165
Coordinates   264731..265126 (+) Length   131 a.a.
NCBI ID   WP_273989130.1    Uniprot ID   -
Organism   Deinococcus aquaticus strain PB-314     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 259731..270126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8445_RS01280 (M8445_01280) - 260496..261752 (+) 1257 WP_273989124.1 C39 family peptidase -
  M8445_RS01285 (M8445_01285) yidC 261819..263453 (-) 1635 WP_273989126.1 membrane protein insertase YidC -
  M8445_RS01290 (M8445_01290) yidD 263450..263731 (-) 282 WP_273989127.1 membrane protein insertion efficiency factor YidD -
  M8445_RS01295 (M8445_01295) rnpA 263923..264294 (-) 372 Protein_257 ribonuclease P protein component -
  M8445_RS01300 (M8445_01300) rpmH 264386..264529 (-) 144 WP_273989128.1 50S ribosomal protein L34 -
  M8445_RS01305 (M8445_01305) comEA 264731..265126 (+) 396 WP_273989130.1 ComEA family DNA-binding protein Machinery gene
  M8445_RS01310 (M8445_01310) comEC 265347..267572 (+) 2226 WP_273990959.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M8445_RS01315 (M8445_01315) - 267634..269283 (-) 1650 WP_273989131.1 MDR family MFS transporter -
  M8445_RS01320 (M8445_01320) - 269280..269780 (-) 501 WP_273989133.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13390.67 Da        Isoelectric Point: 10.5550

>NTDB_id=768503 M8445_RS01305 WP_273989130.1 264731..265126(+) (comEA) [Deinococcus aquaticus strain PB-314]
MISTDRGWTALLAAGTLLCAALSLGPALLPRPQVPVVTRVPLPPPSPTAAPSGSGQEPPVYPATASVQPLISGRVNLNTA
TPEQLEALPKVGPSLAAKLIAGRPYRSLADLDRVKGVGPSTLKTLSPLVSF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=768503 M8445_RS01305 WP_273989130.1 264731..265126(+) (comEA) [Deinococcus aquaticus strain PB-314]
ATGATCAGCACTGACCGGGGCTGGACGGCCCTGCTGGCGGCGGGCACGCTGCTGTGCGCCGCGCTGAGCCTGGGGCCGGC
GCTGCTGCCGCGCCCGCAGGTGCCGGTGGTGACGCGCGTGCCGCTCCCACCTCCCTCGCCCACGGCGGCCCCGTCCGGGA
GCGGGCAGGAGCCGCCGGTCTACCCGGCGACAGCCAGCGTGCAGCCGCTGATCTCGGGCCGCGTGAACCTGAACACCGCC
ACGCCAGAGCAACTGGAGGCCCTGCCGAAGGTGGGTCCGTCGCTGGCGGCGAAGCTGATCGCGGGCCGTCCGTACCGCTC
GCTGGCCGACCTGGACCGCGTGAAGGGCGTGGGGCCGTCGACCCTGAAGACCCTGTCGCCGCTGGTGTCGTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(73-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.885

100

0.649