Detailed information NTG0768494

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QQA32_RS05920
• Genome accession: NZ_CP126926
• Coordinates: 1224629..1225621 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O2:K1:H5 strain APEC E19035
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1219629..1230621

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQA32_RS05890 (QQA32_05890)	ispD	1219690..1220400 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QQA32_RS05895 (QQA32_05895)	ispF	1220400..1220879 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QQA32_RS05900 (QQA32_05900)	truD	1220876..1221925 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
QQA32_RS05905 (QQA32_05905)	surE	1221906..1222667 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QQA32_RS05910 (QQA32_05910)	pcm	1222661..1223287 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
QQA32_RS05915 (QQA32_05915)	nlpD	1223472..1224566 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QQA32_RS05920 (QQA32_05920)	rpoS	1224629..1225621 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QQA32_RS05925 (QQA32_05925)	-	1225799..1226350 (-)	552	WP_001179442.1	flavodoxin family protein	-
QQA32_RS05930 (QQA32_05930)	-	1226575..1227618 (+)	1044	WP_021512441.1	MBL fold metallo-hydrolase	-
QQA32_RS05935 (QQA32_05935)	ygbN	1227761..1229125 (-)	1365	WP_000104443.1	GntP family transporter	-
QQA32_RS05940 (QQA32_05940)	ygbM	1229214..1229990 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=768494 QQA32_RS05920 WP_000081550.1 1224629..1225621(+) (rpoS) [Escherichia coli O2:K1:H5 strain APEC E19035]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=768494 QQA32_RS05920 WP_000081550.1 1224629..1225621(+) (rpoS) [Escherichia coli O2:K1:H5 strain APEC E19035]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715