Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PBT90_RS19025 Genome accession   NZ_CP115160
Coordinates   4456318..4457691 (+) Length   457 a.a.
NCBI ID   WP_264808080.1    Uniprot ID   -
Organism   Algoriphagus halophytocola strain TR-M9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4451318..4462691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBT90_RS19010 (PBT90_19010) - 4452304..4452744 (+) 441 WP_264808077.1 hypothetical protein -
  PBT90_RS19015 (PBT90_19015) - 4452798..4453112 (-) 315 WP_270130692.1 hypothetical protein -
  PBT90_RS19020 (PBT90_19020) polA 4453274..4456102 (+) 2829 WP_264808079.1 DNA polymerase I -
  PBT90_RS19025 (PBT90_19025) radA 4456318..4457691 (+) 1374 WP_264808080.1 DNA repair protein RadA Machinery gene
  PBT90_RS19030 (PBT90_19030) - 4457704..4458138 (-) 435 WP_264808081.1 DM13 domain-containing protein -
  PBT90_RS19035 (PBT90_19035) - 4458323..4459039 (+) 717 WP_264808082.1 TMEM175 family protein -
  PBT90_RS19040 (PBT90_19040) - 4459156..4460496 (+) 1341 WP_264808083.1 glycoside hydrolase family 28 protein -
  PBT90_RS19045 (PBT90_19045) - 4460532..4461575 (-) 1044 WP_270130696.1 putative zinc-binding metallopeptidase -
  PBT90_RS19050 (PBT90_19050) aqpZ 4461813..4462496 (+) 684 WP_264808085.1 aquaporin Z -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50143.84 Da        Isoelectric Point: 6.9454

>NTDB_id=768478 PBT90_RS19025 WP_264808080.1 4456318..4457691(+) (radA) [Algoriphagus halophytocola strain TR-M9]
MAKIKTTFFCQNCGAQSPKWIGKCPACGEWNTYVEEVVQKEESGKGSWKTASSGTKKTSTPKKIQEVNYEEMPRYITADV
ELDRVLGGGIVPGSLVLIGGEPGIGKSTLMLQIALILKGKKILYVSGEESEAQIKMRADRMDAKNPDCYVLSETNTQHIF
QQIEVLKPDLLVIDSIQTLHSQHVESAAGSVSQVRECTAELMKFAKETGTPVFLIGHITKDGSIAGPKVLEHMVDTVLQF
EGDRHLTYRILRTSKNRFGSTHELGIYEMRTEGLRPVSNPSEILLTQREEVLNGVAIGAMVEGNRPLLIEIQSLVSPATY
GTPQRSSTGHDAKRLNMLLAVLEKRGGMRLGQQDVFLNVAGGLRVDDPGLDLAVCASLISSYEDTPVSEEICFAGEVGLG
GEIRAVHRIENRIAEAAKLGFKKIVVSKYAVKGLDLKKFQIEVLAFSKLDEMYAKIF

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=768478 PBT90_RS19025 WP_264808080.1 4456318..4457691(+) (radA) [Algoriphagus halophytocola strain TR-M9]
ATGGCCAAAATAAAAACCACCTTCTTTTGTCAGAACTGCGGAGCTCAAAGTCCAAAATGGATAGGCAAATGCCCCGCCTG
TGGAGAATGGAATACCTATGTGGAAGAAGTAGTTCAAAAGGAGGAATCCGGTAAAGGATCTTGGAAGACGGCTTCATCTG
GAACCAAAAAAACCAGCACTCCAAAGAAAATCCAAGAGGTCAATTACGAGGAAATGCCACGCTATATCACCGCAGACGTA
GAGCTCGACCGGGTTTTGGGCGGAGGAATAGTGCCTGGGTCTCTGGTACTAATCGGAGGTGAACCGGGAATAGGCAAATC
AACTTTGATGCTTCAGATAGCCCTGATCCTAAAAGGCAAAAAGATACTCTATGTCTCAGGTGAAGAAAGCGAAGCGCAAA
TCAAGATGAGGGCAGACCGGATGGATGCTAAAAATCCGGACTGCTATGTACTCTCTGAAACAAATACTCAGCATATTTTT
CAGCAAATAGAAGTTCTGAAGCCTGATTTGCTGGTGATTGACTCCATTCAGACCTTGCACTCTCAGCATGTAGAATCTGC
TGCTGGTTCGGTGTCGCAGGTTCGGGAGTGCACGGCCGAGTTAATGAAATTTGCCAAAGAAACCGGAACCCCTGTTTTCC
TGATCGGTCATATCACCAAAGACGGTTCCATCGCCGGACCTAAGGTTTTGGAACACATGGTAGATACTGTATTGCAGTTT
GAGGGAGATAGGCATTTGACTTATAGGATTTTAAGAACCTCCAAAAACCGGTTTGGATCTACGCACGAGCTGGGAATCTA
TGAAATGCGAACAGAAGGGCTGCGGCCGGTTTCCAACCCCTCTGAAATACTACTTACCCAGCGGGAAGAAGTATTAAACG
GCGTAGCGATTGGCGCTATGGTGGAAGGCAATCGCCCTCTGCTGATAGAAATACAGTCATTGGTAAGCCCGGCCACCTAT
GGGACTCCGCAGCGGAGCAGCACCGGACATGATGCCAAGCGTCTTAATATGTTGTTGGCTGTTTTAGAAAAGCGTGGCGG
AATGCGGCTGGGGCAGCAGGATGTGTTTTTAAATGTAGCCGGCGGACTGCGGGTGGATGATCCGGGCTTGGATTTGGCAG
TTTGCGCCAGCTTGATCTCCAGCTACGAGGATACGCCGGTTTCGGAGGAGATTTGCTTCGCTGGAGAGGTGGGCCTGGGC
GGAGAAATCCGGGCCGTACATCGTATCGAAAACCGAATAGCAGAAGCTGCTAAATTGGGCTTTAAAAAAATCGTAGTTTC
CAAATATGCGGTCAAAGGGCTAGACCTGAAGAAATTTCAAATTGAGGTCTTGGCTTTCAGTAAATTAGATGAAATGTATG
CTAAGATTTTTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(84-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(346-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.422

99.125

0.53
  radA Streptococcus pneumoniae Rx1

50.655

100

0.508
  radA Streptococcus pneumoniae D39

50.655

100

0.508
  radA Streptococcus pneumoniae R6

50.655

100

0.508
  radA Streptococcus pneumoniae TIGR4

50.655

100

0.508
  radA Streptococcus mitis NCTC 12261

50.437

100

0.505
  radA Streptococcus mitis SK321

50.218

100

0.503