Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PBT90_RS14375 Genome accession   NZ_CP115160
Coordinates   3456066..3457097 (-) Length   343 a.a.
NCBI ID   WP_264811282.1    Uniprot ID   -
Organism   Algoriphagus halophytocola strain TR-M9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3451066..3462097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBT90_RS14355 (PBT90_14355) - 3451811..3452659 (-) 849 WP_264811278.1 cell wall-active antibiotics response protein -
  PBT90_RS14360 (PBT90_14360) - 3452782..3453474 (-) 693 WP_264811279.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PBT90_RS14365 (PBT90_14365) queA 3453580..3454629 (-) 1050 WP_264811280.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  PBT90_RS14370 (PBT90_14370) - 3454746..3455993 (+) 1248 WP_264811281.1 ABC transporter permease -
  PBT90_RS14375 (PBT90_14375) recA 3456066..3457097 (-) 1032 WP_264811282.1 recombinase RecA Machinery gene
  PBT90_RS14380 (PBT90_14380) - 3457281..3458072 (+) 792 WP_264811283.1 DUF3108 domain-containing protein -
  PBT90_RS14385 (PBT90_14385) - 3458224..3458916 (+) 693 WP_264811284.1 response regulator transcription factor -
  PBT90_RS14390 (PBT90_14390) - 3458917..3459993 (+) 1077 WP_264811285.1 cell wall metabolism sensor histidine kinase WalK -
  PBT90_RS14395 (PBT90_14395) - 3460072..3460782 (+) 711 WP_270129774.1 RluA family pseudouridine synthase -
  PBT90_RS14400 (PBT90_14400) rplM 3460963..3461406 (+) 444 WP_264811287.1 50S ribosomal protein L13 -
  PBT90_RS14405 (PBT90_14405) rpsI 3461418..3461804 (+) 387 WP_264811288.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36705.22 Da        Isoelectric Point: 5.3444

>NTDB_id=768474 PBT90_RS14375 WP_264811282.1 3456066..3457097(-) (recA) [Algoriphagus halophytocola strain TR-M9]
MSNNAEKLKALQLTIDKLEKSYGKGTVMKLSDNKVQDVPAISTGSLGLDIALGVGGIPRGRVVEVYGPESSGKTTLTMHC
IAEAQKAGGLAAFIDAEHAFDKTYAEKLGIDTENLLISQPDNGEQALEIAEHLIRSGAIDIIVIDSVAALVPKGELEGDM
GDSKMGLQARLMSQALRKLTGAINKTGCACIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKESADSIL
GNRTKVKVVKNKVAPPFKVVEFDIMYGQGISKVGEVIDLGVELDIVKKAGSWFSYNGEKLGQGRESVKTILLDNPELMEE
LEQKIKAASGLTAPSKEAEAGEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=768474 PBT90_RS14375 WP_264811282.1 3456066..3457097(-) (recA) [Algoriphagus halophytocola strain TR-M9]
ATGAGCAATAACGCTGAAAAATTAAAAGCGCTTCAACTGACCATTGACAAGTTGGAGAAATCATACGGTAAAGGAACCGT
GATGAAGTTGAGCGATAATAAGGTACAGGATGTGCCGGCAATTTCTACCGGTTCGCTGGGGTTGGATATTGCACTAGGTG
TGGGGGGAATCCCAAGAGGAAGAGTAGTGGAGGTGTATGGGCCTGAATCATCGGGTAAAACCACCCTGACCATGCACTGC
ATCGCTGAGGCTCAAAAGGCCGGTGGTCTGGCAGCATTTATTGATGCTGAGCATGCGTTTGACAAAACTTATGCGGAGAA
ACTGGGGATTGATACTGAAAACCTGCTGATTTCACAGCCAGACAATGGGGAGCAAGCCCTGGAGATCGCCGAGCACCTGA
TCAGATCAGGCGCCATAGACATCATCGTGATTGACTCCGTGGCTGCATTGGTACCCAAAGGAGAACTGGAGGGGGATATG
GGTGACAGCAAGATGGGACTTCAGGCTAGATTGATGTCTCAGGCTTTGCGTAAGCTGACCGGAGCGATCAACAAAACCGG
TTGTGCCTGTATTTTTATCAATCAGTTGAGAGAAAAAATCGGCGTAATGTTCGGTAATCCAGAAACCACCACCGGAGGTA
ATGCCTTGAAATTTTACGCCTCAGTAAGGCTGGATATCCGTAGAATCGGGCAGATCAAAGAAAGCGCTGATAGTATTTTG
GGCAATAGAACCAAAGTGAAGGTGGTCAAAAACAAAGTGGCTCCTCCATTTAAAGTAGTGGAGTTTGACATCATGTACGG
GCAAGGGATTTCCAAAGTAGGGGAAGTGATCGATCTCGGTGTGGAATTGGATATAGTGAAAAAAGCAGGTTCTTGGTTCT
CTTATAATGGCGAGAAACTAGGACAGGGAAGGGAGTCTGTAAAAACTATCCTTTTGGATAATCCGGAATTGATGGAGGAA
TTAGAGCAAAAAATAAAAGCGGCATCTGGCTTGACTGCTCCTAGCAAGGAGGCAGAGGCCGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

70.909

96.21

0.682
  recA Ralstonia pseudosolanacearum GMI1000

66.767

96.501

0.644
  recA Acinetobacter baylyi ADP1

63.953

100

0.641
  recA Acinetobacter baumannii D1279779

66.25

93.294

0.618
  recA Bacillus subtilis subsp. subtilis str. 168

63.609

95.335

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.116

100

0.606
  recA Neisseria gonorrhoeae strain FA1090

63.303

95.335

0.604
  recA Neisseria gonorrhoeae MS11

63.303

95.335

0.604
  recA Neisseria gonorrhoeae MS11

63.303

95.335

0.604
  recA Helicobacter pylori strain NCTC11637

62.538

96.501

0.604
  recA Helicobacter pylori 26695

62.236

96.501

0.601
  recA Glaesserella parasuis strain SC1401

63.551

93.586

0.595
  recA Streptococcus mitis NCTC 12261

58.671

100

0.592
  recA Pseudomonas stutzeri DSM 10701

60.843

96.793

0.589
  recA Streptococcus pyogenes NZ131

60.976

95.627

0.583
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.5

93.294

0.583
  recA Vibrio cholerae strain A1552

62.5

93.294

0.583
  recA Streptococcus mitis SK321

58.997

98.834

0.583
  recA Lactococcus lactis subsp. cremoris KW2

59.05

98.251

0.58
  recA Streptococcus mutans UA159

59.878

95.918

0.574
  recA Streptococcus pneumoniae Rx1

59.394

96.21

0.571
  recA Streptococcus pneumoniae D39

59.394

96.21

0.571
  recA Streptococcus pneumoniae R6

59.394

96.21

0.571
  recA Streptococcus pneumoniae TIGR4

59.394

96.21

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

59.633

95.335

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.021

95.335

0.563