Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   O7R04_RS17110 Genome accession   NZ_CP115158
Coordinates   3479183..3480328 (+) Length   381 a.a.
NCBI ID   WP_003151067.1    Uniprot ID   A0A6A8LBV3
Organism   Bacillus velezensis strain MBLB 0692     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3474183..3485328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O7R04_RS17090 (O7R04_17090) - 3474658..3475374 (-) 717 WP_014306017.1 Crp/Fnr family transcriptional regulator -
  O7R04_RS17095 (O7R04_17095) narK 3475472..3476662 (-) 1191 WP_044052814.1 nitrate transporter NarK -
  O7R04_RS17100 (O7R04_17100) argS 3476796..3478466 (-) 1671 WP_003151071.1 arginine--tRNA ligase -
  O7R04_RS17105 (O7R04_17105) - 3478463..3478891 (-) 429 WP_003151069.1 DUF1934 domain-containing protein -
  O7R04_RS17110 (O7R04_17110) rapF 3479183..3480328 (+) 1146 WP_003151067.1 tetratricopeptide repeat protein Regulator
  O7R04_RS17115 (O7R04_17115) - 3480312..3480431 (+) 120 WP_003151066.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  O7R04_RS17120 (O7R04_17120) - 3480630..3480834 (+) 205 Protein_3312 helix-turn-helix transcriptional regulator -
  O7R04_RS17125 (O7R04_17125) - 3480848..3481054 (+) 207 WP_270123149.1 hypothetical protein -
  O7R04_RS17135 (O7R04_17135) - 3481462..3481755 (+) 294 WP_270123151.1 hypothetical protein -
  O7R04_RS17140 (O7R04_17140) - 3481786..3482300 (+) 515 Protein_3315 stage II sporulation protein M -
  O7R04_RS17145 (O7R04_17145) speB 3483278..3484150 (-) 873 WP_003151054.1 agmatinase -
  O7R04_RS17150 (O7R04_17150) speE 3484210..3485040 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45339.49 Da        Isoelectric Point: 4.9293

>NTDB_id=768454 O7R04_RS17110 WP_003151067.1 3479183..3480328(+) (rapF) [Bacillus velezensis strain MBLB 0692]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLMTQIHYKLERYDKALEYHKKGVIYSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=768454 O7R04_RS17110 WP_003151067.1 3479183..3480328(+) (rapF) [Bacillus velezensis strain MBLB 0692]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTGTCGGCTATAAAATTTTTTAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGGCTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCAATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACGCTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTTTGCCCCAAGCATATTTTTT
AATGACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAAAAAAGGAGTTATCTATTCCGAAG
AGTCAGCAGATTCAGTTTATTTACACGAATTCGAATTTTTAAAATCTTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAACGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTTGATGCAGCTAAATATTA
TCACAAACTTGAAGATTATAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(223-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LBV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

74.803

100

0.748
  rapC Bacillus subtilis subsp. subtilis str. 168

53.158

99.738

0.53