Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   O7R04_RS07055 Genome accession   NZ_CP115158
Coordinates   1348650..1348934 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain MBLB 0692     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1343650..1353934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O7R04_RS07035 (O7R04_07035) - 1344897..1345805 (+) 909 WP_003154561.1 ketopantoate reductase family protein -
  O7R04_RS07040 (O7R04_07040) - 1345835..1347067 (-) 1233 WP_025851469.1 aminopeptidase -
  O7R04_RS07045 (O7R04_07045) - 1347168..1347302 (-) 135 WP_003154559.1 protein YkpC -
  O7R04_RS07050 (O7R04_07050) mreBH 1347374..1348381 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  O7R04_RS07055 (O7R04_07055) abrB 1348650..1348934 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  O7R04_RS07060 (O7R04_07060) - 1349107..1350411 (+) 1305 WP_014304932.1 ATP-binding protein -
  O7R04_RS07065 (O7R04_07065) - 1350413..1351240 (+) 828 WP_139885254.1 gamma-glutamylcyclotransferase -
  O7R04_RS07070 (O7R04_07070) ktrC 1351281..1351946 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  O7R04_RS07075 (O7R04_07075) ade 1352095..1353828 (+) 1734 WP_139885255.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=768414 O7R04_RS07055 WP_003154557.1 1348650..1348934(+) (abrB) [Bacillus velezensis strain MBLB 0692]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=768414 O7R04_RS07055 WP_003154557.1 1348650..1348934(+) (abrB) [Bacillus velezensis strain MBLB 0692]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543