Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QPX65_RS05065 Genome accession   NZ_CP126698
Coordinates   1085140..1085784 (+) Length   214 a.a.
NCBI ID   WP_011080857.1    Uniprot ID   A0A3Q0L732
Organism   Vibrio vulnificus strain VV2018     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080140..1090784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS05055 (QPX65_05055) - 1080321..1082417 (+) 2097 WP_061058371.1 EAL domain-containing protein -
  QPX65_RS05060 (QPX65_05060) - 1082414..1084783 (-) 2370 WP_285456171.1 DNA polymerase II -
  QPX65_RS05065 (QPX65_05065) letA 1085140..1085784 (+) 645 WP_011080857.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QPX65_RS05070 (QPX65_05070) uvrC 1085786..1087618 (+) 1833 WP_206636695.1 excinuclease ABC subunit UvrC -
  QPX65_RS05075 (QPX65_05075) pgsA 1087665..1088222 (+) 558 WP_011080855.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23791.42 Da        Isoelectric Point: 6.4960

>NTDB_id=768413 QPX65_RS05065 WP_011080857.1 1085140..1085784(+) (letA) [Vibrio vulnificus strain VV2018]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGENAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMMMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLSINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=768413 QPX65_RS05065 WP_011080857.1 1085140..1085784(+) (letA) [Vibrio vulnificus strain VV2018]
TTGATCAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGATAGCGGTGAAAATGCGGTAAAATGGTGTCGTAGCAATCATGCAGACGTCGTTTTAATGG
ATATGAACATGCCTGGTATTGGCGGCTTGGAAGCTACCAAGAAAATTTTGCGTGTTAATCCAGATGTAAAAATCATCGTC
TTAACTGTTCATACGGAAAATCCGTTTCCAACTAAAGTGATGCAAGCGGGGGCTTCTGGTTATTTGACCAAAGGCGCTGG
CCCAGATGAAATGGTGAATGCAATTCGTATTGTCCACAGTGGGCAACGTTATATTTCACCAGAAATTGCGCAGCAAATGG
CGTTAAGCCAGTTTTCGCCTGCGTCCGAAAACCCTTTCAAGGATCTGTCTGAGCGCGAACTTCAGATCATGATGATGATC
ACGAAAGGTCAGAAAGTGACAGATATTTCTGAGCAGTTAAATCTCAGTCCTAAAACTGTCAACAGCTATCGTTATCGTTT
GTTTAGCAAGCTATCGATTAATGGTGACGTAGAGTTGACCCATTTGGCGATTCGCCACGGAATGTTAGATACCGAGACTC
TCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L732

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.476

98.131

0.495
  letA Legionella pneumophila strain ERS1305867

50.476

98.131

0.495