Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   QPX68_RS18725 Genome accession   NZ_CP126696
Coordinates   3780867..3781556 (-) Length   229 a.a.
NCBI ID   WP_032875556.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GZY63     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3775867..3786556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX68_RS18705 - 3776771..3777118 (-) 348 WP_004393256.1 YxeA family protein -
  QPX68_RS18710 yxdM 3777132..3779000 (-) 1869 WP_032875565.1 ABC transporter permease YxdM -
  QPX68_RS18715 yxdL 3778975..3779748 (-) 774 WP_032875562.1 ABC transporter ATP-binding protein YxdL -
  QPX68_RS18720 yxdK 3779893..3780870 (-) 978 WP_032875559.1 two-component system sensor histidine kinase YxdK -
  QPX68_RS18725 braR 3780867..3781556 (-) 690 WP_032875556.1 two-component system response regulator YxdJ Regulator
  QPX68_RS18730 - 3781706..3783145 (-) 1440 WP_032875552.1 HAMP domain-containing sensor histidine kinase -
  QPX68_RS18735 - 3783142..3783864 (-) 723 WP_007614840.1 response regulator transcription factor -
  QPX68_RS18740 - 3784107..3785018 (+) 912 WP_007614842.1 ABC transporter ATP-binding protein -
  QPX68_RS18745 - 3785015..3785773 (+) 759 WP_032875549.1 ABC transporter permease -
  QPX68_RS18750 - 3785790..3786524 (+) 735 WP_223204429.1 ABC transporter permease -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26575.29 Da        Isoelectric Point: 4.8564

>NTDB_id=768375 QPX68_RS18725 WP_032875556.1 3780867..3781556(-) (braR) [Bacillus amyloliquefaciens strain GZY63]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=768375 QPX68_RS18725 WP_032875556.1 3780867..3781556(-) (braR) [Bacillus amyloliquefaciens strain GZY63]
ATGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTTTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAAGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTAGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.807

97.38

0.397