Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   O1A01_RS17915 Genome accession   NZ_CP115153
Coordinates   3415202..3416287 (-) Length   361 a.a.
NCBI ID   WP_270064632.1    Uniprot ID   -
Organism   Sutcliffiella sp. NC1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3410202..3421287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1A01_RS17870 (O1A01_17870) - 3410567..3410833 (-) 267 WP_066416399.1 phosphocarrier protein HPr -
  O1A01_RS17875 (O1A01_17875) - 3411176..3411358 (-) 183 WP_066416398.1 YqzE family protein -
  O1A01_RS17880 (O1A01_17880) - 3411396..3411905 (-) 510 WP_270064629.1 shikimate kinase -
  O1A01_RS17885 (O1A01_17885) comGG 3412282..3412650 (-) 369 WP_157729285.1 competence type IV pilus minor pilin ComGG -
  O1A01_RS17890 (O1A01_17890) comGF 3412562..3413089 (-) 528 WP_270064630.1 competence type IV pilus minor pilin ComGF -
  O1A01_RS17895 (O1A01_17895) - 3413079..3413405 (-) 327 WP_270064631.1 type II secretion system protein -
  O1A01_RS17900 (O1A01_17900) comGD 3413389..3413841 (-) 453 WP_066419802.1 competence type IV pilus minor pilin ComGD -
  O1A01_RS17905 (O1A01_17905) comGC 3413838..3414176 (-) 339 WP_066419803.1 competence type IV pilus major pilin ComGC -
  O1A01_RS17910 (O1A01_17910) comGB 3414178..3415209 (-) 1032 WP_066419805.1 competence type IV pilus assembly protein ComGB -
  O1A01_RS17915 (O1A01_17915) comGA 3415202..3416287 (-) 1086 WP_270064632.1 competence type IV pilus ATPase ComGA Machinery gene
  O1A01_RS17920 (O1A01_17920) - 3416543..3417826 (-) 1284 WP_270064633.1 ATP-binding protein -
  O1A01_RS17925 (O1A01_17925) - 3417976..3418242 (-) 267 WP_066419810.1 hypothetical protein -
  O1A01_RS17930 (O1A01_17930) - 3418513..3419583 (-) 1071 WP_270064634.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  O1A01_RS17935 (O1A01_17935) - 3419857..3420570 (+) 714 WP_270064635.1 helix-turn-helix domain-containing protein -
  O1A01_RS17940 (O1A01_17940) - 3420667..3420906 (+) 240 WP_066419817.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 41285.20 Da        Isoelectric Point: 9.5739

>NTDB_id=768356 O1A01_RS17915 WP_270064632.1 3415202..3416287(-) (comGA) [Sutcliffiella sp. NC1]
MKKEGEKLNIETISEALILEALQLEVSDIHITPYEKHATISFRMDHYLYDQKKITLPLYERLLSHFKFQASMDIGERRKP
QNGSMKLLLKKQTVHLRLSTLPTIYTNESLVIRLLPNQSVFPLKYLSLFPSTTTKLLTWMKHSHGLILFTGPTGCGKTTT
LYSLIDASKKMLKRNIITLEDPVERRSDVVLQVQVNEKAGITYSTGLKAILRHDPDVIMVGEIRDEETARIAIRAALTGH
LVISTLHSKNTKGAIYRLLEFGVPFHELEQTLIAVSAQRLVEIKCPYCEQTCSPYCRKYRKHRLASVYELLYGKELKEVF
KEVKGSASNPKFHTISDCIHKGIVYGYLHPFEIQKWGETVG

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=768356 O1A01_RS17915 WP_270064632.1 3415202..3416287(-) (comGA) [Sutcliffiella sp. NC1]
ATGAAAAAAGAAGGTGAAAAATTGAATATAGAAACAATTAGTGAAGCATTAATTCTAGAAGCTCTCCAATTAGAGGTGTC
CGACATACACATTACACCGTACGAAAAACACGCTACCATCTCATTTCGAATGGATCACTATTTATACGATCAAAAGAAAA
TTACTCTACCCTTATATGAACGATTACTTTCTCACTTTAAATTTCAAGCATCAATGGATATTGGAGAGAGAAGAAAACCT
CAAAATGGCTCAATGAAACTATTGCTAAAAAAACAGACCGTTCATTTGCGCCTTTCTACATTACCTACGATTTATACGAA
CGAAAGTTTAGTAATACGACTTCTACCCAACCAATCCGTCTTTCCTTTAAAATACCTATCTCTGTTCCCATCGACCACTA
CAAAGTTATTAACTTGGATGAAACATTCTCACGGTTTAATTTTATTCACTGGACCAACTGGATGTGGCAAAACAACTACA
CTATATTCCCTTATTGATGCTAGTAAAAAAATGCTAAAGCGAAATATTATTACGTTAGAAGACCCAGTTGAAAGAAGAAG
TGACGTCGTTTTACAAGTACAAGTAAATGAAAAAGCGGGAATCACTTATTCGACAGGTTTAAAAGCTATTTTACGCCATG
ATCCTGATGTCATCATGGTTGGAGAAATCCGTGATGAGGAAACGGCTAGAATTGCCATTCGTGCAGCGTTAACAGGACAT
TTAGTAATAAGCACACTGCATTCTAAAAATACAAAAGGTGCAATATACAGGCTATTGGAATTTGGTGTACCTTTTCATGA
GTTAGAACAAACCCTTATTGCAGTATCAGCCCAGCGACTTGTTGAAATTAAATGTCCATACTGTGAGCAAACTTGTTCAC
CATACTGCCGAAAATATCGGAAGCATCGCCTTGCTAGTGTATACGAATTATTGTACGGGAAGGAGCTAAAAGAAGTTTTT
AAAGAAGTGAAAGGTTCTGCTTCTAATCCAAAGTTCCACACGATCAGTGATTGTATTCATAAAGGAATAGTTTATGGTTA
TTTGCACCCATTTGAAATACAAAAGTGGGGGGAGACCGTTGGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(17-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

58.739

96.676

0.568