Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QPX68_RS13895 Genome accession   NZ_CP126696
Coordinates   2855643..2856347 (-) Length   234 a.a.
NCBI ID   WP_032873596.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GZY63     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2850643..2861347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX68_RS13875 cysK 2850653..2851624 (+) 972 WP_087920777.1 cysteine synthase A -
  QPX68_RS13880 pepV 2851662..2853053 (-) 1392 WP_032873601.1 dipeptidase PepV -
  QPX68_RS13885 - 2853149..2854453 (+) 1305 WP_012118223.1 NCS2 family permease -
  QPX68_RS13890 - 2854486..2855646 (-) 1161 WP_032873599.1 ABC transporter permease -
  QPX68_RS13895 pptA 2855643..2856347 (-) 705 WP_032873596.1 ABC transporter ATP-binding protein Regulator
  QPX68_RS13900 - 2856627..2856848 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  QPX68_RS13905 - 2856976..2857695 (-) 720 WP_007613195.1 pseudouridine synthase -
  QPX68_RS13910 - 2857751..2859388 (-) 1638 WP_003152313.1 polysaccharide biosynthesis protein -
  QPX68_RS13915 - 2859593..2860858 (+) 1266 WP_007408798.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25784.51 Da        Isoelectric Point: 4.4971

>NTDB_id=768349 QPX68_RS13895 WP_032873596.1 2855643..2856347(-) (pptA) [Bacillus amyloliquefaciens strain GZY63]
MGELLNANIVCAGYADRPKVISDVSLSVNAGEITGLIGANGAGKSTVIKAVLGLSRAIEGGIEWNDSSYAYIPERPSFYD
ELTLWEHLELTGSLRGIEGEECRERAERLLEEFSLTSVKHDLPSGFSKGMQQKLMLIQAFLAKPDIYIIDEPFIGLDPIS
TKLFTDMLIAEKERGAGILMCTHVLDTAEKICDRFYLLDQGALLLQGTLEELQEKTGSRSLLDCFYSAVRSSQR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=768349 QPX68_RS13895 WP_032873596.1 2855643..2856347(-) (pptA) [Bacillus amyloliquefaciens strain GZY63]
TTGGGAGAATTATTGAATGCAAACATTGTCTGCGCCGGTTATGCTGACAGGCCGAAGGTGATTTCTGATGTATCTCTGTC
AGTCAACGCTGGTGAAATTACCGGTTTAATCGGAGCGAACGGCGCGGGAAAAAGCACAGTGATAAAGGCGGTTCTCGGGC
TGTCCCGGGCTATAGAAGGCGGTATTGAGTGGAATGATTCATCTTATGCTTACATACCGGAGCGTCCGAGTTTTTACGAT
GAACTGACGCTTTGGGAGCACCTCGAGCTGACCGGGTCATTGCGGGGTATAGAAGGGGAAGAATGCCGTGAGCGGGCCGA
GCGGCTGCTTGAAGAGTTTTCACTGACATCGGTAAAACATGATTTGCCTTCCGGTTTTTCAAAAGGGATGCAGCAAAAAT
TGATGCTCATACAGGCATTTTTGGCGAAGCCGGATATTTACATCATTGATGAGCCTTTTATCGGACTTGATCCGATCTCA
ACAAAGCTGTTTACCGACATGCTGATTGCTGAGAAAGAAAGGGGCGCGGGGATTTTGATGTGCACTCATGTTCTGGATAC
GGCGGAAAAAATCTGCGACCGGTTTTATTTGCTGGATCAGGGCGCTCTGCTTCTTCAAGGCACGTTAGAGGAGCTTCAGG
AAAAAACGGGGAGCCGTTCACTGCTGGATTGCTTTTATTCAGCGGTTCGGAGCAGTCAGCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

45.833

100

0.47
  pptA Streptococcus thermophilus LMD-9

45

100

0.462